miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 146727 1.09 0.003572
Target:  5'- gACGACGAGAGCUCCGUCGCCCACAUCu -3'
miRNA:   3'- -UGCUGCUCUCGAGGCAGCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 182141 0.8 0.263056
Target:  5'- uGCGuCGAGGGCUUCGUgGCCgACGUCu -3'
miRNA:   3'- -UGCuGCUCUCGAGGCAgCGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 83302 0.77 0.393264
Target:  5'- gGCGACG-GAGCUCuCGucgucgagcgcggcgUCGCCCAUGUCg -3'
miRNA:   3'- -UGCUGCuCUCGAG-GC---------------AGCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 161844 0.77 0.382003
Target:  5'- aGCGGCGGGgccgacAGCUCCGUCGCgCGCGc- -3'
miRNA:   3'- -UGCUGCUC------UCGAGGCAGCGgGUGUag -5'
16148 3' -57.4 NC_004065.1 + 210254 0.76 0.414738
Target:  5'- uUGACuccGGCUCCGUCGCCCACAc- -3'
miRNA:   3'- uGCUGcucUCGAGGCAGCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 33177 0.75 0.475947
Target:  5'- cACuGCGAGAcGCUguaCCGUCGCCCGCAc- -3'
miRNA:   3'- -UGcUGCUCU-CGA---GGCAGCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 89989 0.75 0.471424
Target:  5'- gACGACGGGAGCgaacccgacggagCCGUCGCUUcucggcgGCGUCa -3'
miRNA:   3'- -UGCUGCUCUCGa------------GGCAGCGGG-------UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 167999 0.75 0.466921
Target:  5'- uCGACGAcAGCUCCGUCGa-CGCGUCu -3'
miRNA:   3'- uGCUGCUcUCGAGGCAGCggGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 128915 0.74 0.531778
Target:  5'- -gGGCGAGGGCUCCGUUuacgGCgCACGUa -3'
miRNA:   3'- ugCUGCUCUCGAGGCAG----CGgGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 128772 0.74 0.541323
Target:  5'- aGCGuuGAGGGCgCCGUCGCCgGCGg- -3'
miRNA:   3'- -UGCugCUCUCGaGGCAGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 120215 0.73 0.599599
Target:  5'- gGCGACGAGGGCguucUCGUCgaacguGCCCGCGg- -3'
miRNA:   3'- -UGCUGCUCUCGa---GGCAG------CGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 84477 0.73 0.57028
Target:  5'- cACGACGcGAuCUCCGUCGgCCACuUCg -3'
miRNA:   3'- -UGCUGCuCUcGAGGCAGCgGGUGuAG- -5'
16148 3' -57.4 NC_004065.1 + 133436 0.72 0.648817
Target:  5'- cCGGgGAGuGCagCGUCGCCaCGCGUCg -3'
miRNA:   3'- uGCUgCUCuCGagGCAGCGG-GUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 141606 0.72 0.658653
Target:  5'- gACGGCGGcGGGCUCCGcUGCCgGCGg- -3'
miRNA:   3'- -UGCUGCU-CUCGAGGCaGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 53397 0.72 0.619266
Target:  5'- uACGugGAG-GCgCCGggCGCCCGCuAUCa -3'
miRNA:   3'- -UGCugCUCuCGaGGCa-GCGGGUG-UAG- -5'
16148 3' -57.4 NC_004065.1 + 106560 0.71 0.71698
Target:  5'- -gGACGcAGGGCuUCCGUCaCCgACAUCa -3'
miRNA:   3'- ugCUGC-UCUCG-AGGCAGcGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 105770 0.71 0.69772
Target:  5'- uGCGACGGcGGCUUcccgCGUCGCCCAUcuUCg -3'
miRNA:   3'- -UGCUGCUcUCGAG----GCAGCGGGUGu-AG- -5'
16148 3' -57.4 NC_004065.1 + 171815 0.71 0.70738
Target:  5'- gGCGACGuGGGCUuugaccgcaugcCCGUCGCCaacaGCAa- -3'
miRNA:   3'- -UGCUGCuCUCGA------------GGCAGCGGg---UGUag -5'
16148 3' -57.4 NC_004065.1 + 19040 0.7 0.745345
Target:  5'- -gGACGAcGGCggCgGUgGCCCACAUCu -3'
miRNA:   3'- ugCUGCUcUCGa-GgCAgCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 91765 0.7 0.769267
Target:  5'- aGCGACGGGGGCgaggcuggagagaUCGUCGUCCGCc-- -3'
miRNA:   3'- -UGCUGCUCUCGa------------GGCAGCGGGUGuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.