miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 169950 0.7 0.772883
Target:  5'- gACGACGAcGAGCg-CG--GCCCGCGUCg -3'
miRNA:   3'- -UGCUGCU-CUCGagGCagCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 98869 0.7 0.772883
Target:  5'- cCGgaACGGGGGUcgUCGUCGCCCACGcgcUCg -3'
miRNA:   3'- uGC--UGCUCUCGa-GGCAGCGGGUGU---AG- -5'
16148 3' -57.4 NC_004065.1 + 91765 0.7 0.769267
Target:  5'- aGCGACGGGGGCgaggcuggagagaUCGUCGUCCGCc-- -3'
miRNA:   3'- -UGCUGCUCUCGa------------GGCAGCGGGUGuag -5'
16148 3' -57.4 NC_004065.1 + 168664 0.69 0.807933
Target:  5'- cGCGAgGAGAcccccauCUCCGucuUCGCCCGgGUCg -3'
miRNA:   3'- -UGCUgCUCUc------GAGGC---AGCGGGUgUAG- -5'
16148 3' -57.4 NC_004065.1 + 170173 0.69 0.816346
Target:  5'- uCGAUGAGugcgugcGCUCCGUCaagaucgaGCCC-CAUCg -3'
miRNA:   3'- uGCUGCUCu------CGAGGCAG--------CGGGuGUAG- -5'
16148 3' -57.4 NC_004065.1 + 201531 0.69 0.78095
Target:  5'- uGCGACG-GAGCUCCGcggCGCugucggccagacgCCACAacUCg -3'
miRNA:   3'- -UGCUGCuCUCGAGGCa--GCG-------------GGUGU--AG- -5'
16148 3' -57.4 NC_004065.1 + 154168 0.69 0.78184
Target:  5'- gGCGGCGGcGGCUguugcuggcucgCCGUCGCCaucuCGCAUCc -3'
miRNA:   3'- -UGCUGCUcUCGA------------GGCAGCGG----GUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 222644 0.69 0.816346
Target:  5'- cCGAgGAGGGC-CCGcgucagCGcCCCACGUCc -3'
miRNA:   3'- uGCUgCUCUCGaGGCa-----GC-GGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 61681 0.68 0.863324
Target:  5'- aGCG-CGAGGGgUCCGcagCGCgUCACGUCc -3'
miRNA:   3'- -UGCuGCUCUCgAGGCa--GCG-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 80467 0.68 0.824603
Target:  5'- cGCGGCGAGGGCUCCaaCGgCCu--UCa -3'
miRNA:   3'- -UGCUGCUCUCGAGGcaGCgGGuguAG- -5'
16148 3' -57.4 NC_004065.1 + 133985 0.68 0.832699
Target:  5'- gGCGGCcGGGGC-CCGU-GCCCACGc- -3'
miRNA:   3'- -UGCUGcUCUCGaGGCAgCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 58200 0.68 0.840624
Target:  5'- uUGGCGAcGGGCaugCgGUCaaaGCCCACGUCg -3'
miRNA:   3'- uGCUGCU-CUCGa--GgCAG---CGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 46316 0.68 0.840624
Target:  5'- gGCGccuACGAGGGCUaCGU-GCgCCACAUCu -3'
miRNA:   3'- -UGC---UGCUCUCGAgGCAgCG-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 142962 0.68 0.824603
Target:  5'- uACGAUGAGgcAGCUCaaCGUCuCCCACAg- -3'
miRNA:   3'- -UGCUGCUC--UCGAG--GCAGcGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 115297 0.68 0.855944
Target:  5'- uCGG-GAGGGCUCCGcCGCCUAUuccUCu -3'
miRNA:   3'- uGCUgCUCUCGAGGCaGCGGGUGu--AG- -5'
16148 3' -57.4 NC_004065.1 + 205476 0.68 0.855944
Target:  5'- cCGACGAGGGgcucguCUCCGcUGCCguCGUCg -3'
miRNA:   3'- uGCUGCUCUC------GAGGCaGCGGguGUAG- -5'
16148 3' -57.4 NC_004065.1 + 83268 0.68 0.848375
Target:  5'- uGCGGC-AGAcGCcgCCGaCGCCCACAUa -3'
miRNA:   3'- -UGCUGcUCU-CGa-GGCaGCGGGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 205167 0.68 0.840624
Target:  5'- cCGuCGAG-GCcgCCGUCGCCgccaACAUCg -3'
miRNA:   3'- uGCuGCUCuCGa-GGCAGCGGg---UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 34967 0.68 0.824603
Target:  5'- cCGACcugcacuucaGAGAGacgCCGUgCGCCCugGUCa -3'
miRNA:   3'- uGCUG----------CUCUCga-GGCA-GCGGGugUAG- -5'
16148 3' -57.4 NC_004065.1 + 116722 0.68 0.863324
Target:  5'- cCGGCGcgcGAGCggCGUCGCCCGuCAUg -3'
miRNA:   3'- uGCUGCu--CUCGagGCAGCGGGU-GUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.