Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 98869 | 0.7 | 0.772883 |
Target: 5'- cCGgaACGGGGGUcgUCGUCGCCCACGcgcUCg -3' miRNA: 3'- uGC--UGCUCUCGa-GGCAGCGGGUGU---AG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 29230 | 0.7 | 0.772883 |
Target: 5'- cGCGcCGAGAcg-CCGUCGCCCGCc-- -3' miRNA: 3'- -UGCuGCUCUcgaGGCAGCGGGUGuag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 169950 | 0.7 | 0.772883 |
Target: 5'- gACGACGAcGAGCg-CG--GCCCGCGUCg -3' miRNA: 3'- -UGCUGCU-CUCGagGCagCGGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 201531 | 0.69 | 0.78095 |
Target: 5'- uGCGACG-GAGCUCCGcggCGCugucggccagacgCCACAacUCg -3' miRNA: 3'- -UGCUGCuCUCGAGGCa--GCG-------------GGUGU--AG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 154168 | 0.69 | 0.78184 |
Target: 5'- gGCGGCGGcGGCUguugcuggcucgCCGUCGCCaucuCGCAUCc -3' miRNA: 3'- -UGCUGCUcUCGA------------GGCAGCGG----GUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 168664 | 0.69 | 0.807933 |
Target: 5'- cGCGAgGAGAcccccauCUCCGucuUCGCCCGgGUCg -3' miRNA: 3'- -UGCUgCUCUc------GAGGC---AGCGGGUgUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 222644 | 0.69 | 0.816346 |
Target: 5'- cCGAgGAGGGC-CCGcgucagCGcCCCACGUCc -3' miRNA: 3'- uGCUgCUCUCGaGGCa-----GC-GGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 170173 | 0.69 | 0.816346 |
Target: 5'- uCGAUGAGugcgugcGCUCCGUCaagaucgaGCCC-CAUCg -3' miRNA: 3'- uGCUGCUCu------CGAGGCAG--------CGGGuGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 80467 | 0.68 | 0.824603 |
Target: 5'- cGCGGCGAGGGCUCCaaCGgCCu--UCa -3' miRNA: 3'- -UGCUGCUCUCGAGGcaGCgGGuguAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 34967 | 0.68 | 0.824603 |
Target: 5'- cCGACcugcacuucaGAGAGacgCCGUgCGCCCugGUCa -3' miRNA: 3'- uGCUG----------CUCUCga-GGCA-GCGGGugUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 142962 | 0.68 | 0.824603 |
Target: 5'- uACGAUGAGgcAGCUCaaCGUCuCCCACAg- -3' miRNA: 3'- -UGCUGCUC--UCGAG--GCAGcGGGUGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 133985 | 0.68 | 0.832699 |
Target: 5'- gGCGGCcGGGGC-CCGU-GCCCACGc- -3' miRNA: 3'- -UGCUGcUCUCGaGGCAgCGGGUGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 58200 | 0.68 | 0.840624 |
Target: 5'- uUGGCGAcGGGCaugCgGUCaaaGCCCACGUCg -3' miRNA: 3'- uGCUGCU-CUCGa--GgCAG---CGGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 205167 | 0.68 | 0.840624 |
Target: 5'- cCGuCGAG-GCcgCCGUCGCCgccaACAUCg -3' miRNA: 3'- uGCuGCUCuCGa-GGCAGCGGg---UGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 46316 | 0.68 | 0.840624 |
Target: 5'- gGCGccuACGAGGGCUaCGU-GCgCCACAUCu -3' miRNA: 3'- -UGC---UGCUCUCGAgGCAgCG-GGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 83268 | 0.68 | 0.848375 |
Target: 5'- uGCGGC-AGAcGCcgCCGaCGCCCACAUa -3' miRNA: 3'- -UGCUGcUCU-CGa-GGCaGCGGGUGUAg -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 205476 | 0.68 | 0.855944 |
Target: 5'- cCGACGAGGGgcucguCUCCGcUGCCguCGUCg -3' miRNA: 3'- uGCUGCUCUC------GAGGCaGCGGguGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 115297 | 0.68 | 0.855944 |
Target: 5'- uCGG-GAGGGCUCCGcCGCCUAUuccUCu -3' miRNA: 3'- uGCUgCUCUCGAGGCaGCGGGUGu--AG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 116722 | 0.68 | 0.863324 |
Target: 5'- cCGGCGcgcGAGCggCGUCGCCCGuCAUg -3' miRNA: 3'- uGCUGCu--CUCGagGCAGCGGGU-GUAg -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 61681 | 0.68 | 0.863324 |
Target: 5'- aGCG-CGAGGGgUCCGcagCGCgUCACGUCc -3' miRNA: 3'- -UGCuGCUCUCgAGGCa--GCG-GGUGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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