Results 41 - 60 of 82 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 90380 | 0.68 | 0.866223 |
Target: 5'- gACGACGAGucCUuccCCGUCGUcgacacgccaccgcuCCGCAUCu -3' miRNA: 3'- -UGCUGCUCucGA---GGCAGCG---------------GGUGUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 169563 | 0.67 | 0.869802 |
Target: 5'- cGCGGCagucGAGAGCUCCGUCGacgugguCCUcgGUCu -3' miRNA: 3'- -UGCUG----CUCUCGAGGCAGC-------GGGugUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 173907 | 0.67 | 0.870512 |
Target: 5'- -aGGCGAGcGCcgCCGUCGUCCgggacggucACGUCu -3' miRNA: 3'- ugCUGCUCuCGa-GGCAGCGGG---------UGUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 162222 | 0.67 | 0.870512 |
Target: 5'- aACGaACG-GAGCUCCGUaCGCCguauacuuaCACGUg -3' miRNA: 3'- -UGC-UGCuCUCGAGGCA-GCGG---------GUGUAg -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 110414 | 0.67 | 0.870512 |
Target: 5'- gACGGCGucucCUCCGcCGCCgGCGUCc -3' miRNA: 3'- -UGCUGCucucGAGGCaGCGGgUGUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 68701 | 0.67 | 0.877502 |
Target: 5'- gAUGACG-GAGCUgCUGUCGacgaaccacaaCCGCAUCc -3' miRNA: 3'- -UGCUGCuCUCGA-GGCAGCg----------GGUGUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 86011 | 0.67 | 0.883619 |
Target: 5'- uGCGACGGacaggacGAGCUCuCGaaugugCGCCCAgacCAUCu -3' miRNA: 3'- -UGCUGCU-------CUCGAG-GCa-----GCGGGU---GUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 114666 | 0.67 | 0.884289 |
Target: 5'- gGCGGgGAGAccGCUaucgggCCGaUCGCCCGCcUCa -3' miRNA: 3'- -UGCUgCUCU--CGA------GGC-AGCGGGUGuAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 185351 | 0.67 | 0.884289 |
Target: 5'- uCGACGAccaucGCUUCGUCGCCgACGa- -3' miRNA: 3'- uGCUGCUcu---CGAGGCAGCGGgUGUag -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 67804 | 0.67 | 0.888916 |
Target: 5'- uACGGCGuacGGAGCUCCGUUcguuucuaacgguaGCUCGUGUCg -3' miRNA: 3'- -UGCUGC---UCUCGAGGCAG--------------CGGGUGUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 16728 | 0.67 | 0.890868 |
Target: 5'- cCGACGAccGaaCCGUCGUCCACgGUCa -3' miRNA: 3'- uGCUGCUcuCgaGGCAGCGGGUG-UAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 168941 | 0.67 | 0.890868 |
Target: 5'- cGCGACGcAGAGCagCG-CGCCgACAc- -3' miRNA: 3'- -UGCUGC-UCUCGagGCaGCGGgUGUag -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 143452 | 0.67 | 0.890868 |
Target: 5'- uGCGACGAGGugccGCUCUGcgucgucgugaCGCCCguGCGUCu -3' miRNA: 3'- -UGCUGCUCU----CGAGGCa----------GCGGG--UGUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 6251 | 0.67 | 0.890868 |
Target: 5'- uACGGCaAGcAGCUCgCGgcCGUCCGCAUCc -3' miRNA: 3'- -UGCUGcUC-UCGAG-GCa-GCGGGUGUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 199343 | 0.67 | 0.897237 |
Target: 5'- cGCGACGGaccAGCUCC-UUGCucuCCGCGUCg -3' miRNA: 3'- -UGCUGCUc--UCGAGGcAGCG---GGUGUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 19778 | 0.67 | 0.897237 |
Target: 5'- uCGAUGGGcAGUUCgaGUCGUCCGCgGUCg -3' miRNA: 3'- uGCUGCUC-UCGAGg-CAGCGGGUG-UAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 167949 | 0.67 | 0.897237 |
Target: 5'- aGCGuCGGcGAGCUUCGUCggcuuGUCCACgAUCg -3' miRNA: 3'- -UGCuGCU-CUCGAGGCAG-----CGGGUG-UAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 35607 | 0.67 | 0.897237 |
Target: 5'- cCGGgGAGAaCUCCGUCuggaacGCCCGCcgCu -3' miRNA: 3'- uGCUgCUCUcGAGGCAG------CGGGUGuaG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 122115 | 0.67 | 0.897237 |
Target: 5'- cGCGGCGAGAGaggUCCuGUCGa--GCGUCg -3' miRNA: 3'- -UGCUGCUCUCg--AGG-CAGCgggUGUAG- -5' |
|||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 109629 | 0.67 | 0.897237 |
Target: 5'- cGCGGCGAagGAGCagCGUCcGCCCG-AUCc -3' miRNA: 3'- -UGCUGCU--CUCGagGCAG-CGGGUgUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home