miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 84477 0.73 0.57028
Target:  5'- cACGACGcGAuCUCCGUCGgCCACuUCg -3'
miRNA:   3'- -UGCUGCuCUcGAGGCAGCgGGUGuAG- -5'
16148 3' -57.4 NC_004065.1 + 86011 0.67 0.883619
Target:  5'- uGCGACGGacaggacGAGCUCuCGaaugugCGCCCAgacCAUCu -3'
miRNA:   3'- -UGCUGCU-------CUCGAG-GCa-----GCGGGU---GUAG- -5'
16148 3' -57.4 NC_004065.1 + 88066 0.66 0.909331
Target:  5'- cCGGaGGGAGgaCCGUCGUcgCCAUAUCu -3'
miRNA:   3'- uGCUgCUCUCgaGGCAGCG--GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 89989 0.75 0.471424
Target:  5'- gACGACGGGAGCgaacccgacggagCCGUCGCUUcucggcgGCGUCa -3'
miRNA:   3'- -UGCUGCUCUCGa------------GGCAGCGGG-------UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 90380 0.68 0.866223
Target:  5'- gACGACGAGucCUuccCCGUCGUcgacacgccaccgcuCCGCAUCu -3'
miRNA:   3'- -UGCUGCUCucGA---GGCAGCG---------------GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 91672 0.66 0.925829
Target:  5'- gACGACGGGGGUcgCCuuGUCGCagagCgACAUCg -3'
miRNA:   3'- -UGCUGCUCUCGa-GG--CAGCG----GgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 91765 0.7 0.769267
Target:  5'- aGCGACGGGGGCgaggcuggagagaUCGUCGUCCGCc-- -3'
miRNA:   3'- -UGCUGCUCUCGa------------GGCAGCGGGUGuag -5'
16148 3' -57.4 NC_004065.1 + 92197 0.66 0.920551
Target:  5'- cGCGAaaCGAGAcGCgggCCGcgaacagGCCCACAUCc -3'
miRNA:   3'- -UGCU--GCUCU-CGa--GGCag-----CGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 98869 0.7 0.772883
Target:  5'- cCGgaACGGGGGUcgUCGUCGCCCACGcgcUCg -3'
miRNA:   3'- uGC--UGCUCUCGa-GGCAGCGGGUGU---AG- -5'
16148 3' -57.4 NC_004065.1 + 105770 0.71 0.69772
Target:  5'- uGCGACGGcGGCUUcccgCGUCGCCCAUcuUCg -3'
miRNA:   3'- -UGCUGCUcUCGAG----GCAGCGGGUGu-AG- -5'
16148 3' -57.4 NC_004065.1 + 106560 0.71 0.71698
Target:  5'- -gGACGcAGGGCuUCCGUCaCCgACAUCa -3'
miRNA:   3'- ugCUGC-UCUCG-AGGCAGcGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 109629 0.67 0.897237
Target:  5'- cGCGGCGAagGAGCagCGUCcGCCCG-AUCc -3'
miRNA:   3'- -UGCUGCU--CUCGagGCAG-CGGGUgUAG- -5'
16148 3' -57.4 NC_004065.1 + 110414 0.67 0.870512
Target:  5'- gACGGCGucucCUCCGcCGCCgGCGUCc -3'
miRNA:   3'- -UGCUGCucucGAGGCaGCGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 111112 0.66 0.925829
Target:  5'- uACGuCGccAGCUUCGUCGCCaucuggcucgugCGCGUCg -3'
miRNA:   3'- -UGCuGCucUCGAGGCAGCGG------------GUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 114666 0.67 0.884289
Target:  5'- gGCGGgGAGAccGCUaucgggCCGaUCGCCCGCcUCa -3'
miRNA:   3'- -UGCUgCUCU--CGA------GGC-AGCGGGUGuAG- -5'
16148 3' -57.4 NC_004065.1 + 115297 0.68 0.855944
Target:  5'- uCGG-GAGGGCUCCGcCGCCUAUuccUCu -3'
miRNA:   3'- uGCUgCUCUCGAGGCaGCGGGUGu--AG- -5'
16148 3' -57.4 NC_004065.1 + 116722 0.68 0.863324
Target:  5'- cCGGCGcgcGAGCggCGUCGCCCGuCAUg -3'
miRNA:   3'- uGCUGCu--CUCGagGCAGCGGGU-GUAg -5'
16148 3' -57.4 NC_004065.1 + 120215 0.73 0.599599
Target:  5'- gGCGACGAGGGCguucUCGUCgaacguGCCCGCGg- -3'
miRNA:   3'- -UGCUGCUCUCGa---GGCAG------CGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 122115 0.67 0.897237
Target:  5'- cGCGGCGAGAGaggUCCuGUCGa--GCGUCg -3'
miRNA:   3'- -UGCUGCUCUCg--AGG-CAGCgggUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 124255 0.66 0.925829
Target:  5'- gGCGacaGCGGGaAGCcgCCGUCGCaCCGCu-- -3'
miRNA:   3'- -UGC---UGCUC-UCGa-GGCAGCG-GGUGuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.