miRNA display CGI


Results 41 - 60 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 128772 0.74 0.541323
Target:  5'- aGCGuuGAGGGCgCCGUCGCCgGCGg- -3'
miRNA:   3'- -UGCugCUCUCGaGGCAGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 128915 0.74 0.531778
Target:  5'- -gGGCGAGGGCUCCGUUuacgGCgCACGUa -3'
miRNA:   3'- ugCUGCUCUCGAGGCAG----CGgGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 130140 0.67 0.902179
Target:  5'- aACGGCGAGAGgaaggacgaggCCGUCGCuauCCGCGa- -3'
miRNA:   3'- -UGCUGCUCUCga---------GGCAGCG---GGUGUag -5'
16148 3' -57.4 NC_004065.1 + 133436 0.72 0.648817
Target:  5'- cCGGgGAGuGCagCGUCGCCaCGCGUCg -3'
miRNA:   3'- uGCUgCUCuCGagGCAGCGG-GUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 133985 0.68 0.832699
Target:  5'- gGCGGCcGGGGC-CCGU-GCCCACGc- -3'
miRNA:   3'- -UGCUGcUCUCGaGGCAgCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 140028 0.67 0.903392
Target:  5'- aGCGACG---GCUCCGUCGgguucgcuCCCGuCGUCg -3'
miRNA:   3'- -UGCUGCucuCGAGGCAGC--------GGGU-GUAG- -5'
16148 3' -57.4 NC_004065.1 + 140806 0.67 0.903392
Target:  5'- uACGACGAGAGCgaCGUgGUggACAUCc -3'
miRNA:   3'- -UGCUGCUCUCGagGCAgCGggUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 141606 0.72 0.658653
Target:  5'- gACGGCGGcGGGCUCCGcUGCCgGCGg- -3'
miRNA:   3'- -UGCUGCU-CUCGAGGCaGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 142962 0.68 0.824603
Target:  5'- uACGAUGAGgcAGCUCaaCGUCuCCCACAg- -3'
miRNA:   3'- -UGCUGCUC--UCGAG--GCAGcGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 143452 0.67 0.890868
Target:  5'- uGCGACGAGGugccGCUCUGcgucgucgugaCGCCCguGCGUCu -3'
miRNA:   3'- -UGCUGCUCU----CGAGGCa----------GCGGG--UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 144005 0.66 0.925829
Target:  5'- gGCGcacauuCGAGAGCucguccugUCCGUCGCaCUAUAUa -3'
miRNA:   3'- -UGCu-----GCUCUCG--------AGGCAGCG-GGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 146727 1.09 0.003572
Target:  5'- gACGACGAGAGCUCCGUCGCCCACAUCu -3'
miRNA:   3'- -UGCUGCUCUCGAGGCAGCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 154168 0.69 0.78184
Target:  5'- gGCGGCGGcGGCUguugcuggcucgCCGUCGCCaucuCGCAUCc -3'
miRNA:   3'- -UGCUGCUcUCGA------------GGCAGCGG----GUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 161844 0.77 0.382003
Target:  5'- aGCGGCGGGgccgacAGCUCCGUCGCgCGCGc- -3'
miRNA:   3'- -UGCUGCUC------UCGAGGCAGCGgGUGUag -5'
16148 3' -57.4 NC_004065.1 + 162222 0.67 0.870512
Target:  5'- aACGaACG-GAGCUCCGUaCGCCguauacuuaCACGUg -3'
miRNA:   3'- -UGC-UGCuCUCGAGGCA-GCGG---------GUGUAg -5'
16148 3' -57.4 NC_004065.1 + 167949 0.67 0.897237
Target:  5'- aGCGuCGGcGAGCUUCGUCggcuuGUCCACgAUCg -3'
miRNA:   3'- -UGCuGCU-CUCGAGGCAG-----CGGGUG-UAG- -5'
16148 3' -57.4 NC_004065.1 + 167999 0.75 0.466921
Target:  5'- uCGACGAcAGCUCCGUCGa-CGCGUCu -3'
miRNA:   3'- uGCUGCUcUCGAGGCAGCggGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 168664 0.69 0.807933
Target:  5'- cGCGAgGAGAcccccauCUCCGucuUCGCCCGgGUCg -3'
miRNA:   3'- -UGCUgCUCUc------GAGGC---AGCGGGUgUAG- -5'
16148 3' -57.4 NC_004065.1 + 168941 0.67 0.890868
Target:  5'- cGCGACGcAGAGCagCG-CGCCgACAc- -3'
miRNA:   3'- -UGCUGC-UCUCGagGCaGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 169563 0.67 0.869802
Target:  5'- cGCGGCagucGAGAGCUCCGUCGacgugguCCUcgGUCu -3'
miRNA:   3'- -UGCUG----CUCUCGAGGCAGC-------GGGugUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.