miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 222644 0.69 0.816346
Target:  5'- cCGAgGAGGGC-CCGcgucagCGcCCCACGUCc -3'
miRNA:   3'- uGCUgCUCUCGaGGCa-----GC-GGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 212887 0.66 0.935722
Target:  5'- cAUGACGGGAGUUgCCaggGUCGUCgAgGUCg -3'
miRNA:   3'- -UGCUGCUCUCGA-GG---CAGCGGgUgUAG- -5'
16148 3' -57.4 NC_004065.1 + 210254 0.76 0.414738
Target:  5'- uUGACuccGGCUCCGUCGCCCACAc- -3'
miRNA:   3'- uGCUGcucUCGAGGCAGCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 205904 0.66 0.925829
Target:  5'- uUGACGGauGGGCcgCCGagGCCgACGUCg -3'
miRNA:   3'- uGCUGCU--CUCGa-GGCagCGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 205476 0.68 0.855944
Target:  5'- cCGACGAGGGgcucguCUCCGcUGCCguCGUCg -3'
miRNA:   3'- uGCUGCUCUC------GAGGCaGCGGguGUAG- -5'
16148 3' -57.4 NC_004065.1 + 205167 0.68 0.840624
Target:  5'- cCGuCGAG-GCcgCCGUCGCCgccaACAUCg -3'
miRNA:   3'- uGCuGCUCuCGa-GGCAGCGGg---UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 201531 0.69 0.78095
Target:  5'- uGCGACG-GAGCUCCGcggCGCugucggccagacgCCACAacUCg -3'
miRNA:   3'- -UGCUGCuCUCGAGGCa--GCG-------------GGUGU--AG- -5'
16148 3' -57.4 NC_004065.1 + 201448 0.66 0.925829
Target:  5'- -aGACGAGGGUgucCCGUCGaCgCGCAc- -3'
miRNA:   3'- ugCUGCUCUCGa--GGCAGC-GgGUGUag -5'
16148 3' -57.4 NC_004065.1 + 200749 0.66 0.909331
Target:  5'- uCGACGAGgcGGCUCacgcgucgGUCGCUCucuCGUCg -3'
miRNA:   3'- uGCUGCUC--UCGAGg-------CAGCGGGu--GUAG- -5'
16148 3' -57.4 NC_004065.1 + 199343 0.67 0.897237
Target:  5'- cGCGACGGaccAGCUCC-UUGCucuCCGCGUCg -3'
miRNA:   3'- -UGCUGCUc--UCGAGGcAGCG---GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 196199 0.66 0.935722
Target:  5'- cACGGCGuGguugauggccAGCUUguccgCGUCGuCCCACGUCc -3'
miRNA:   3'- -UGCUGCuC----------UCGAG-----GCAGC-GGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 195406 0.67 0.902179
Target:  5'- cACGGCGAGccguacacguacGCUCCcgccgcGUCGCCguCGUCg -3'
miRNA:   3'- -UGCUGCUCu-----------CGAGG------CAGCGGguGUAG- -5'
16148 3' -57.4 NC_004065.1 + 195314 0.66 0.920011
Target:  5'- aACGAgaagcuCGAGGucuucguGCUCCuGggcggCGCCCGCGUCu -3'
miRNA:   3'- -UGCU------GCUCU-------CGAGG-Ca----GCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 188957 0.66 0.909331
Target:  5'- uACGACaAGcucuucGGCUUCGUCGCCgCGCGg- -3'
miRNA:   3'- -UGCUGcUC------UCGAGGCAGCGG-GUGUag -5'
16148 3' -57.4 NC_004065.1 + 185351 0.67 0.884289
Target:  5'- uCGACGAccaucGCUUCGUCGCCgACGa- -3'
miRNA:   3'- uGCUGCUcu---CGAGGCAGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 182141 0.8 0.263056
Target:  5'- uGCGuCGAGGGCUUCGUgGCCgACGUCu -3'
miRNA:   3'- -UGCuGCUCUCGAGGCAgCGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 174455 0.66 0.920551
Target:  5'- gACGGCGGGA---CCGUCuaCUACGUCg -3'
miRNA:   3'- -UGCUGCUCUcgaGGCAGcgGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 173907 0.67 0.870512
Target:  5'- -aGGCGAGcGCcgCCGUCGUCCgggacggucACGUCu -3'
miRNA:   3'- ugCUGCUCuCGa-GGCAGCGGG---------UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 171884 0.66 0.930886
Target:  5'- gGCGACGA---UUUCGcCGCCUGCGUCg -3'
miRNA:   3'- -UGCUGCUcucGAGGCaGCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 171815 0.71 0.70738
Target:  5'- gGCGACGuGGGCUuugaccgcaugcCCGUCGCCaacaGCAa- -3'
miRNA:   3'- -UGCUGCuCUCGA------------GGCAGCGGg---UGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.