Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 170173 | 0.69 | 0.816346 |
Target: 5'- uCGAUGAGugcgugcGCUCCGUCaagaucgaGCCC-CAUCg -3' miRNA: 3'- uGCUGCUCu------CGAGGCAG--------CGGGuGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 169950 | 0.7 | 0.772883 |
Target: 5'- gACGACGAcGAGCg-CG--GCCCGCGUCg -3' miRNA: 3'- -UGCUGCU-CUCGagGCagCGGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 169563 | 0.67 | 0.869802 |
Target: 5'- cGCGGCagucGAGAGCUCCGUCGacgugguCCUcgGUCu -3' miRNA: 3'- -UGCUG----CUCUCGAGGCAGC-------GGGugUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 168941 | 0.67 | 0.890868 |
Target: 5'- cGCGACGcAGAGCagCG-CGCCgACAc- -3' miRNA: 3'- -UGCUGC-UCUCGagGCaGCGGgUGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 168664 | 0.69 | 0.807933 |
Target: 5'- cGCGAgGAGAcccccauCUCCGucuUCGCCCGgGUCg -3' miRNA: 3'- -UGCUgCUCUc------GAGGC---AGCGGGUgUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 167999 | 0.75 | 0.466921 |
Target: 5'- uCGACGAcAGCUCCGUCGa-CGCGUCu -3' miRNA: 3'- uGCUGCUcUCGAGGCAGCggGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 167949 | 0.67 | 0.897237 |
Target: 5'- aGCGuCGGcGAGCUUCGUCggcuuGUCCACgAUCg -3' miRNA: 3'- -UGCuGCU-CUCGAGGCAG-----CGGGUG-UAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 162222 | 0.67 | 0.870512 |
Target: 5'- aACGaACG-GAGCUCCGUaCGCCguauacuuaCACGUg -3' miRNA: 3'- -UGC-UGCuCUCGAGGCA-GCGG---------GUGUAg -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 161844 | 0.77 | 0.382003 |
Target: 5'- aGCGGCGGGgccgacAGCUCCGUCGCgCGCGc- -3' miRNA: 3'- -UGCUGCUC------UCGAGGCAGCGgGUGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 154168 | 0.69 | 0.78184 |
Target: 5'- gGCGGCGGcGGCUguugcuggcucgCCGUCGCCaucuCGCAUCc -3' miRNA: 3'- -UGCUGCUcUCGA------------GGCAGCGG----GUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 146727 | 1.09 | 0.003572 |
Target: 5'- gACGACGAGAGCUCCGUCGCCCACAUCu -3' miRNA: 3'- -UGCUGCUCUCGAGGCAGCGGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 144005 | 0.66 | 0.925829 |
Target: 5'- gGCGcacauuCGAGAGCucguccugUCCGUCGCaCUAUAUa -3' miRNA: 3'- -UGCu-----GCUCUCG--------AGGCAGCG-GGUGUAg -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 143452 | 0.67 | 0.890868 |
Target: 5'- uGCGACGAGGugccGCUCUGcgucgucgugaCGCCCguGCGUCu -3' miRNA: 3'- -UGCUGCUCU----CGAGGCa----------GCGGG--UGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 142962 | 0.68 | 0.824603 |
Target: 5'- uACGAUGAGgcAGCUCaaCGUCuCCCACAg- -3' miRNA: 3'- -UGCUGCUC--UCGAG--GCAGcGGGUGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 141606 | 0.72 | 0.658653 |
Target: 5'- gACGGCGGcGGGCUCCGcUGCCgGCGg- -3' miRNA: 3'- -UGCUGCU-CUCGAGGCaGCGGgUGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 140806 | 0.67 | 0.903392 |
Target: 5'- uACGACGAGAGCgaCGUgGUggACAUCc -3' miRNA: 3'- -UGCUGCUCUCGagGCAgCGggUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 140028 | 0.67 | 0.903392 |
Target: 5'- aGCGACG---GCUCCGUCGgguucgcuCCCGuCGUCg -3' miRNA: 3'- -UGCUGCucuCGAGGCAGC--------GGGU-GUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 133985 | 0.68 | 0.832699 |
Target: 5'- gGCGGCcGGGGC-CCGU-GCCCACGc- -3' miRNA: 3'- -UGCUGcUCUCGaGGCAgCGGGUGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 133436 | 0.72 | 0.648817 |
Target: 5'- cCGGgGAGuGCagCGUCGCCaCGCGUCg -3' miRNA: 3'- uGCUgCUCuCGagGCAGCGG-GUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 130140 | 0.67 | 0.902179 |
Target: 5'- aACGGCGAGAGgaaggacgaggCCGUCGCuauCCGCGa- -3' miRNA: 3'- -UGCUGCUCUCga---------GGCAGCG---GGUGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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