miRNA display CGI


Results 61 - 80 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 86011 0.67 0.883619
Target:  5'- uGCGACGGacaggacGAGCUCuCGaaugugCGCCCAgacCAUCu -3'
miRNA:   3'- -UGCUGCU-------CUCGAG-GCa-----GCGGGU---GUAG- -5'
16148 3' -57.4 NC_004065.1 + 84477 0.73 0.57028
Target:  5'- cACGACGcGAuCUCCGUCGgCCACuUCg -3'
miRNA:   3'- -UGCUGCuCUcGAGGCAGCgGGUGuAG- -5'
16148 3' -57.4 NC_004065.1 + 83302 0.77 0.393264
Target:  5'- gGCGACG-GAGCUCuCGucgucgagcgcggcgUCGCCCAUGUCg -3'
miRNA:   3'- -UGCUGCuCUCGAG-GC---------------AGCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 83268 0.68 0.848375
Target:  5'- uGCGGC-AGAcGCcgCCGaCGCCCACAUa -3'
miRNA:   3'- -UGCUGcUCU-CGa-GGCaGCGGGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 80467 0.68 0.824603
Target:  5'- cGCGGCGAGGGCUCCaaCGgCCu--UCa -3'
miRNA:   3'- -UGCUGCUCUCGAGGcaGCgGGuguAG- -5'
16148 3' -57.4 NC_004065.1 + 68701 0.67 0.877502
Target:  5'- gAUGACG-GAGCUgCUGUCGacgaaccacaaCCGCAUCc -3'
miRNA:   3'- -UGCUGCuCUCGA-GGCAGCg----------GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 67804 0.67 0.888916
Target:  5'- uACGGCGuacGGAGCUCCGUUcguuucuaacgguaGCUCGUGUCg -3'
miRNA:   3'- -UGCUGC---UCUCGAGGCAG--------------CGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 61681 0.68 0.863324
Target:  5'- aGCG-CGAGGGgUCCGcagCGCgUCACGUCc -3'
miRNA:   3'- -UGCuGCUCUCgAGGCa--GCG-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 58200 0.68 0.840624
Target:  5'- uUGGCGAcGGGCaugCgGUCaaaGCCCACGUCg -3'
miRNA:   3'- uGCUGCU-CUCGa--GgCAG---CGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 53397 0.72 0.619266
Target:  5'- uACGugGAG-GCgCCGggCGCCCGCuAUCa -3'
miRNA:   3'- -UGCugCUCuCGaGGCa-GCGGGUG-UAG- -5'
16148 3' -57.4 NC_004065.1 + 52113 0.66 0.915051
Target:  5'- cCGACGuAGAccGCUgaaCCGUCGUCCguaACGUCu -3'
miRNA:   3'- uGCUGC-UCU--CGA---GGCAGCGGG---UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 46316 0.68 0.840624
Target:  5'- gGCGccuACGAGGGCUaCGU-GCgCCACAUCu -3'
miRNA:   3'- -UGC---UGCUCUCGAgGCAgCG-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 42712 0.66 0.935722
Target:  5'- uCGGCGAGcGCUCCucCGCCC-CAg- -3'
miRNA:   3'- uGCUGCUCuCGAGGcaGCGGGuGUag -5'
16148 3' -57.4 NC_004065.1 + 41770 0.66 0.915051
Target:  5'- gACGACGc-AGCUgCUGUCGaaCCGCAUCu -3'
miRNA:   3'- -UGCUGCucUCGA-GGCAGCg-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 35607 0.67 0.897237
Target:  5'- cCGGgGAGAaCUCCGUCuggaacGCCCGCcgCu -3'
miRNA:   3'- uGCUgCUCUcGAGGCAG------CGGGUGuaG- -5'
16148 3' -57.4 NC_004065.1 + 34967 0.68 0.824603
Target:  5'- cCGACcugcacuucaGAGAGacgCCGUgCGCCCugGUCa -3'
miRNA:   3'- uGCUG----------CUCUCga-GGCA-GCGGGugUAG- -5'
16148 3' -57.4 NC_004065.1 + 33177 0.75 0.475947
Target:  5'- cACuGCGAGAcGCUguaCCGUCGCCCGCAc- -3'
miRNA:   3'- -UGcUGCUCU-CGA---GGCAGCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 29230 0.7 0.772883
Target:  5'- cGCGcCGAGAcg-CCGUCGCCCGCc-- -3'
miRNA:   3'- -UGCuGCUCUcgaGGCAGCGGGUGuag -5'
16148 3' -57.4 NC_004065.1 + 19778 0.67 0.897237
Target:  5'- uCGAUGGGcAGUUCgaGUCGUCCGCgGUCg -3'
miRNA:   3'- uGCUGCUC-UCGAGg-CAGCGGGUG-UAG- -5'
16148 3' -57.4 NC_004065.1 + 19040 0.7 0.745345
Target:  5'- -gGACGAcGGCggCgGUgGCCCACAUCu -3'
miRNA:   3'- ugCUGCUcUCGa-GgCAgCGGGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.