miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 98869 0.7 0.772883
Target:  5'- cCGgaACGGGGGUcgUCGUCGCCCACGcgcUCg -3'
miRNA:   3'- uGC--UGCUCUCGa-GGCAGCGGGUGU---AG- -5'
16148 3' -57.4 NC_004065.1 + 91765 0.7 0.769267
Target:  5'- aGCGACGGGGGCgaggcuggagagaUCGUCGUCCGCc-- -3'
miRNA:   3'- -UGCUGCUCUCGa------------GGCAGCGGGUGuag -5'
16148 3' -57.4 NC_004065.1 + 19040 0.7 0.745345
Target:  5'- -gGACGAcGGCggCgGUgGCCCACAUCu -3'
miRNA:   3'- ugCUGCUcUCGa-GgCAgCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 106560 0.71 0.71698
Target:  5'- -gGACGcAGGGCuUCCGUCaCCgACAUCa -3'
miRNA:   3'- ugCUGC-UCUCG-AGGCAGcGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 128772 0.74 0.541323
Target:  5'- aGCGuuGAGGGCgCCGUCGCCgGCGg- -3'
miRNA:   3'- -UGCugCUCUCGaGGCAGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 128915 0.74 0.531778
Target:  5'- -gGGCGAGGGCUCCGUUuacgGCgCACGUa -3'
miRNA:   3'- ugCUGCUCUCGAGGCAG----CGgGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 167999 0.75 0.466921
Target:  5'- uCGACGAcAGCUCCGUCGa-CGCGUCu -3'
miRNA:   3'- uGCUGCUcUCGAGGCAGCggGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 146727 1.09 0.003572
Target:  5'- gACGACGAGAGCUCCGUCGCCCACAUCu -3'
miRNA:   3'- -UGCUGCUCUCGAGGCAGCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 201531 0.69 0.78095
Target:  5'- uGCGACG-GAGCUCCGcggCGCugucggccagacgCCACAacUCg -3'
miRNA:   3'- -UGCUGCuCUCGAGGCa--GCG-------------GGUGU--AG- -5'
16148 3' -57.4 NC_004065.1 + 154168 0.69 0.78184
Target:  5'- gGCGGCGGcGGCUguugcuggcucgCCGUCGCCaucuCGCAUCc -3'
miRNA:   3'- -UGCUGCUcUCGA------------GGCAGCGG----GUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 110414 0.67 0.870512
Target:  5'- gACGGCGucucCUCCGcCGCCgGCGUCc -3'
miRNA:   3'- -UGCUGCucucGAGGCaGCGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 162222 0.67 0.870512
Target:  5'- aACGaACG-GAGCUCCGUaCGCCguauacuuaCACGUg -3'
miRNA:   3'- -UGC-UGCuCUCGAGGCA-GCGG---------GUGUAg -5'
16148 3' -57.4 NC_004065.1 + 61681 0.68 0.863324
Target:  5'- aGCG-CGAGGGgUCCGcagCGCgUCACGUCc -3'
miRNA:   3'- -UGCuGCUCUCgAGGCa--GCG-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 46316 0.68 0.840624
Target:  5'- gGCGccuACGAGGGCUaCGU-GCgCCACAUCu -3'
miRNA:   3'- -UGC---UGCUCUCGAgGCAgCG-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 58200 0.68 0.840624
Target:  5'- uUGGCGAcGGGCaugCgGUCaaaGCCCACGUCg -3'
miRNA:   3'- uGCUGCU-CUCGa--GgCAG---CGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 133985 0.68 0.832699
Target:  5'- gGCGGCcGGGGC-CCGU-GCCCACGc- -3'
miRNA:   3'- -UGCUGcUCUCGaGGCAgCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 80467 0.68 0.824603
Target:  5'- cGCGGCGAGGGCUCCaaCGgCCu--UCa -3'
miRNA:   3'- -UGCUGCUCUCGAGGcaGCgGGuguAG- -5'
16148 3' -57.4 NC_004065.1 + 222644 0.69 0.816346
Target:  5'- cCGAgGAGGGC-CCGcgucagCGcCCCACGUCc -3'
miRNA:   3'- uGCUgCUCUCGaGGCa-----GC-GGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 212887 0.66 0.935722
Target:  5'- cAUGACGGGAGUUgCCaggGUCGUCgAgGUCg -3'
miRNA:   3'- -UGCUGCUCUCGA-GG---CAGCGGgUgUAG- -5'
16148 3' -57.4 NC_004065.1 + 161844 0.77 0.382003
Target:  5'- aGCGGCGGGgccgacAGCUCCGUCGCgCGCGc- -3'
miRNA:   3'- -UGCUGCUC------UCGAGGCAGCGgGUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.