miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 168664 0.69 0.807933
Target:  5'- cGCGAgGAGAcccccauCUCCGucuUCGCCCGgGUCg -3'
miRNA:   3'- -UGCUgCUCUc------GAGGC---AGCGGGUgUAG- -5'
16148 3' -57.4 NC_004065.1 + 170173 0.69 0.816346
Target:  5'- uCGAUGAGugcgugcGCUCCGUCaagaucgaGCCC-CAUCg -3'
miRNA:   3'- uGCUGCUCu------CGAGGCAG--------CGGGuGUAG- -5'
16148 3' -57.4 NC_004065.1 + 142962 0.68 0.824603
Target:  5'- uACGAUGAGgcAGCUCaaCGUCuCCCACAg- -3'
miRNA:   3'- -UGCUGCUC--UCGAG--GCAGcGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 34967 0.68 0.824603
Target:  5'- cCGACcugcacuucaGAGAGacgCCGUgCGCCCugGUCa -3'
miRNA:   3'- uGCUG----------CUCUCga-GGCA-GCGGGugUAG- -5'
16148 3' -57.4 NC_004065.1 + 205167 0.68 0.840624
Target:  5'- cCGuCGAG-GCcgCCGUCGCCgccaACAUCg -3'
miRNA:   3'- uGCuGCUCuCGa-GGCAGCGGg---UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 83268 0.68 0.848375
Target:  5'- uGCGGC-AGAcGCcgCCGaCGCCCACAUa -3'
miRNA:   3'- -UGCUGcUCU-CGa-GGCaGCGGGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 115297 0.68 0.855944
Target:  5'- uCGG-GAGGGCUCCGcCGCCUAUuccUCu -3'
miRNA:   3'- uGCUgCUCUCGAGGCaGCGGGUGu--AG- -5'
16148 3' -57.4 NC_004065.1 + 205476 0.68 0.855944
Target:  5'- cCGACGAGGGgcucguCUCCGcUGCCguCGUCg -3'
miRNA:   3'- uGCUGCUCUC------GAGGCaGCGGguGUAG- -5'
16148 3' -57.4 NC_004065.1 + 171815 0.71 0.70738
Target:  5'- gGCGACGuGGGCUuugaccgcaugcCCGUCGCCaacaGCAa- -3'
miRNA:   3'- -UGCUGCuCUCGA------------GGCAGCGGg---UGUag -5'
16148 3' -57.4 NC_004065.1 + 105770 0.71 0.69772
Target:  5'- uGCGACGGcGGCUUcccgCGUCGCCCAUcuUCg -3'
miRNA:   3'- -UGCUGCUcUCGAG----GCAGCGGGUGu-AG- -5'
16148 3' -57.4 NC_004065.1 + 141606 0.72 0.658653
Target:  5'- gACGGCGGcGGGCUCCGcUGCCgGCGg- -3'
miRNA:   3'- -UGCUGCU-CUCGAGGCaGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 161844 0.77 0.382003
Target:  5'- aGCGGCGGGgccgacAGCUCCGUCGCgCGCGc- -3'
miRNA:   3'- -UGCUGCUC------UCGAGGCAGCGgGUGUag -5'
16148 3' -57.4 NC_004065.1 + 83302 0.77 0.393264
Target:  5'- gGCGACG-GAGCUCuCGucgucgagcgcggcgUCGCCCAUGUCg -3'
miRNA:   3'- -UGCUGCuCUCGAG-GC---------------AGCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 210254 0.76 0.414738
Target:  5'- uUGACuccGGCUCCGUCGCCCACAc- -3'
miRNA:   3'- uGCUGcucUCGAGGCAGCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 89989 0.75 0.471424
Target:  5'- gACGACGGGAGCgaacccgacggagCCGUCGCUUcucggcgGCGUCa -3'
miRNA:   3'- -UGCUGCUCUCGa------------GGCAGCGGG-------UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 33177 0.75 0.475947
Target:  5'- cACuGCGAGAcGCUguaCCGUCGCCCGCAc- -3'
miRNA:   3'- -UGcUGCUCU-CGA---GGCAGCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 84477 0.73 0.57028
Target:  5'- cACGACGcGAuCUCCGUCGgCCACuUCg -3'
miRNA:   3'- -UGCUGCuCUcGAGGCAGCgGGUGuAG- -5'
16148 3' -57.4 NC_004065.1 + 120215 0.73 0.599599
Target:  5'- gGCGACGAGGGCguucUCGUCgaacguGCCCGCGg- -3'
miRNA:   3'- -UGCUGCUCUCGa---GGCAG------CGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 53397 0.72 0.619266
Target:  5'- uACGugGAG-GCgCCGggCGCCCGCuAUCa -3'
miRNA:   3'- -UGCugCUCuCGaGGCa-GCGGGUG-UAG- -5'
16148 3' -57.4 NC_004065.1 + 133436 0.72 0.648817
Target:  5'- cCGGgGAGuGCagCGUCGCCaCGCGUCg -3'
miRNA:   3'- uGCUgCUCuCGagGCAGCGG-GUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.