miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 205476 0.68 0.855944
Target:  5'- cCGACGAGGGgcucguCUCCGcUGCCguCGUCg -3'
miRNA:   3'- uGCUGCUCUC------GAGGCaGCGGguGUAG- -5'
16148 3' -57.4 NC_004065.1 + 115297 0.68 0.855944
Target:  5'- uCGG-GAGGGCUCCGcCGCCUAUuccUCu -3'
miRNA:   3'- uGCUgCUCUCGAGGCaGCGGGUGu--AG- -5'
16148 3' -57.4 NC_004065.1 + 169950 0.7 0.772883
Target:  5'- gACGACGAcGAGCg-CG--GCCCGCGUCg -3'
miRNA:   3'- -UGCUGCU-CUCGagGCagCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 84477 0.73 0.57028
Target:  5'- cACGACGcGAuCUCCGUCGgCCACuUCg -3'
miRNA:   3'- -UGCUGCuCUcGAGGCAGCgGGUGuAG- -5'
16148 3' -57.4 NC_004065.1 + 140806 0.67 0.903392
Target:  5'- uACGACGAGAGCgaCGUgGUggACAUCc -3'
miRNA:   3'- -UGCUGCUCUCGagGCAgCGggUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 185351 0.67 0.884289
Target:  5'- uCGACGAccaucGCUUCGUCGCCgACGa- -3'
miRNA:   3'- uGCUGCUcu---CGAGGCAGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 205167 0.68 0.840624
Target:  5'- cCGuCGAG-GCcgCCGUCGCCgccaACAUCg -3'
miRNA:   3'- uGCuGCUCuCGa-GGCAGCGGg---UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 33177 0.75 0.475947
Target:  5'- cACuGCGAGAcGCUguaCCGUCGCCCGCAc- -3'
miRNA:   3'- -UGcUGCUCU-CGA---GGCAGCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 173907 0.67 0.870512
Target:  5'- -aGGCGAGcGCcgCCGUCGUCCgggacggucACGUCu -3'
miRNA:   3'- ugCUGCUCuCGa-GGCAGCGGG---------UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 89989 0.75 0.471424
Target:  5'- gACGACGGGAGCgaacccgacggagCCGUCGCUUcucggcgGCGUCa -3'
miRNA:   3'- -UGCUGCUCUCGa------------GGCAGCGGG-------UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 83268 0.68 0.848375
Target:  5'- uGCGGC-AGAcGCcgCCGaCGCCCACAUa -3'
miRNA:   3'- -UGCUGcUCU-CGa-GGCaGCGGGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 116722 0.68 0.863324
Target:  5'- cCGGCGcgcGAGCggCGUCGCCCGuCAUg -3'
miRNA:   3'- uGCUGCu--CUCGagGCAGCGGGU-GUAg -5'
16148 3' -57.4 NC_004065.1 + 142962 0.68 0.824603
Target:  5'- uACGAUGAGgcAGCUCaaCGUCuCCCACAg- -3'
miRNA:   3'- -UGCUGCUC--UCGAG--GCAGcGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 29230 0.7 0.772883
Target:  5'- cGCGcCGAGAcg-CCGUCGCCCGCc-- -3'
miRNA:   3'- -UGCuGCUCUcgaGGCAGCGGGUGuag -5'
16148 3' -57.4 NC_004065.1 + 141606 0.72 0.658653
Target:  5'- gACGGCGGcGGGCUCCGcUGCCgGCGg- -3'
miRNA:   3'- -UGCUGCU-CUCGAGGCaGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 120215 0.73 0.599599
Target:  5'- gGCGACGAGGGCguucUCGUCgaacguGCCCGCGg- -3'
miRNA:   3'- -UGCUGCUCUCGa---GGCAG------CGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 174455 0.66 0.920551
Target:  5'- gACGGCGGGA---CCGUCuaCUACGUCg -3'
miRNA:   3'- -UGCUGCUCUcgaGGCAGcgGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 188957 0.66 0.909331
Target:  5'- uACGACaAGcucuucGGCUUCGUCGCCgCGCGg- -3'
miRNA:   3'- -UGCUGcUC------UCGAGGCAGCGG-GUGUag -5'
16148 3' -57.4 NC_004065.1 + 35607 0.67 0.897237
Target:  5'- cCGGgGAGAaCUCCGUCuggaacGCCCGCcgCu -3'
miRNA:   3'- uGCUgCUCUcGAGGCAG------CGGGUGuaG- -5'
16148 3' -57.4 NC_004065.1 + 67804 0.67 0.888916
Target:  5'- uACGGCGuacGGAGCUCCGUUcguuucuaacgguaGCUCGUGUCg -3'
miRNA:   3'- -UGCUGC---UCUCGAGGCAG--------------CGGGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.