miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 201448 0.66 0.925829
Target:  5'- -aGACGAGGGUgucCCGUCGaCgCGCAc- -3'
miRNA:   3'- ugCUGCUCUCGa--GGCAGC-GgGUGUag -5'
16148 3' -57.4 NC_004065.1 + 169563 0.67 0.869802
Target:  5'- cGCGGCagucGAGAGCUCCGUCGacgugguCCUcgGUCu -3'
miRNA:   3'- -UGCUG----CUCUCGAGGCAGC-------GGGugUAG- -5'
16148 3' -57.4 NC_004065.1 + 90380 0.68 0.866223
Target:  5'- gACGACGAGucCUuccCCGUCGUcgacacgccaccgcuCCGCAUCu -3'
miRNA:   3'- -UGCUGCUCucGA---GGCAGCG---------------GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 212887 0.66 0.935722
Target:  5'- cAUGACGGGAGUUgCCaggGUCGUCgAgGUCg -3'
miRNA:   3'- -UGCUGCUCUCGA-GG---CAGCGGgUgUAG- -5'
16148 3' -57.4 NC_004065.1 + 41770 0.66 0.915051
Target:  5'- gACGACGc-AGCUgCUGUCGaaCCGCAUCu -3'
miRNA:   3'- -UGCUGCucUCGA-GGCAGCg-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 91765 0.7 0.769267
Target:  5'- aGCGACGGGGGCgaggcuggagagaUCGUCGUCCGCc-- -3'
miRNA:   3'- -UGCUGCUCUCGa------------GGCAGCGGGUGuag -5'
16148 3' -57.4 NC_004065.1 + 19040 0.7 0.745345
Target:  5'- -gGACGAcGGCggCgGUgGCCCACAUCu -3'
miRNA:   3'- ugCUGCUcUCGa-GgCAgCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 128915 0.74 0.531778
Target:  5'- -gGGCGAGGGCUCCGUUuacgGCgCACGUa -3'
miRNA:   3'- ugCUGCUCUCGAGGCAG----CGgGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 80467 0.68 0.824603
Target:  5'- cGCGGCGAGGGCUCCaaCGgCCu--UCa -3'
miRNA:   3'- -UGCUGCUCUCGAGGcaGCgGGuguAG- -5'
16148 3' -57.4 NC_004065.1 + 133985 0.68 0.832699
Target:  5'- gGCGGCcGGGGC-CCGU-GCCCACGc- -3'
miRNA:   3'- -UGCUGcUCUCGaGGCAgCGGGUGUag -5'
16148 3' -57.4 NC_004065.1 + 140028 0.67 0.903392
Target:  5'- aGCGACG---GCUCCGUCGgguucgcuCCCGuCGUCg -3'
miRNA:   3'- -UGCUGCucuCGAGGCAGC--------GGGU-GUAG- -5'
16148 3' -57.4 NC_004065.1 + 195406 0.67 0.902179
Target:  5'- cACGGCGAGccguacacguacGCUCCcgccgcGUCGCCguCGUCg -3'
miRNA:   3'- -UGCUGCUCu-----------CGAGG------CAGCGGguGUAG- -5'
16148 3' -57.4 NC_004065.1 + 130140 0.67 0.902179
Target:  5'- aACGGCGAGAGgaaggacgaggCCGUCGCuauCCGCGa- -3'
miRNA:   3'- -UGCUGCUCUCga---------GGCAGCG---GGUGUag -5'
16148 3' -57.4 NC_004065.1 + 167949 0.67 0.897237
Target:  5'- aGCGuCGGcGAGCUUCGUCggcuuGUCCACgAUCg -3'
miRNA:   3'- -UGCuGCU-CUCGAGGCAG-----CGGGUG-UAG- -5'
16148 3' -57.4 NC_004065.1 + 199343 0.67 0.897237
Target:  5'- cGCGACGGaccAGCUCC-UUGCucuCCGCGUCg -3'
miRNA:   3'- -UGCUGCUc--UCGAGGcAGCG---GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 143452 0.67 0.890868
Target:  5'- uGCGACGAGGugccGCUCUGcgucgucgugaCGCCCguGCGUCu -3'
miRNA:   3'- -UGCUGCUCU----CGAGGCa----------GCGGG--UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 168941 0.67 0.890868
Target:  5'- cGCGACGcAGAGCagCG-CGCCgACAc- -3'
miRNA:   3'- -UGCUGC-UCUCGagGCaGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 6251 0.67 0.890868
Target:  5'- uACGGCaAGcAGCUCgCGgcCGUCCGCAUCc -3'
miRNA:   3'- -UGCUGcUC-UCGAG-GCa-GCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 46316 0.68 0.840624
Target:  5'- gGCGccuACGAGGGCUaCGU-GCgCCACAUCu -3'
miRNA:   3'- -UGC---UGCUCUCGAgGCAgCG-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 58200 0.68 0.840624
Target:  5'- uUGGCGAcGGGCaugCgGUCaaaGCCCACGUCg -3'
miRNA:   3'- uGCUGCU-CUCGa--GgCAG---CGGGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.