miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 207626 0.65 0.944901
Target:  5'- aCGGUGaccagggacagcUCcaUGCCGCAcgcggccggcucccUCUCUGUCGUCg -3'
miRNA:   3'- cGCCGC------------AG--ACGGCGU--------------AGAGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 120704 0.66 0.941844
Target:  5'- aGCGGC-UC-GcCCGCuuucagCUCCGUCGUa -3'
miRNA:   3'- -CGCCGcAGaC-GGCGua----GAGGUAGCAg -5'
16148 5' -57 NC_004065.1 + 21731 0.66 0.941844
Target:  5'- -aGGUuucgCUGCCGCuAUCUUgguaCGUCGUCa -3'
miRNA:   3'- cgCCGca--GACGGCG-UAGAG----GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 35934 0.66 0.941844
Target:  5'- uCGGUGcUCUGUCGCGg--CCgcagGUCGUCg -3'
miRNA:   3'- cGCCGC-AGACGGCGUagaGG----UAGCAG- -5'
16148 5' -57 NC_004065.1 + 96768 0.66 0.941844
Target:  5'- aCGGCGgagGCgGCAUCgcggCCGUCuUCg -3'
miRNA:   3'- cGCCGCagaCGgCGUAGa---GGUAGcAG- -5'
16148 5' -57 NC_004065.1 + 90999 0.66 0.93729
Target:  5'- aCGGCGugaguuucaccgUCUGCUGCGUgUCC-UCGa- -3'
miRNA:   3'- cGCCGC------------AGACGGCGUAgAGGuAGCag -5'
16148 5' -57 NC_004065.1 + 164489 0.66 0.93729
Target:  5'- cGCGcccaGCGUCaGCUGCGUgaaCUCUucuUCGUCg -3'
miRNA:   3'- -CGC----CGCAGaCGGCGUA---GAGGu--AGCAG- -5'
16148 5' -57 NC_004065.1 + 101614 0.66 0.93729
Target:  5'- gGCGGCG-CcGCCGCcgCUgCCGcUCGg- -3'
miRNA:   3'- -CGCCGCaGaCGGCGuaGA-GGU-AGCag -5'
16148 5' -57 NC_004065.1 + 125466 0.66 0.932515
Target:  5'- cGCGGCGUgcacagcgGCCGCAccugcccguUCUCCGU-GUg -3'
miRNA:   3'- -CGCCGCAga------CGGCGU---------AGAGGUAgCAg -5'
16148 5' -57 NC_004065.1 + 63877 0.66 0.932515
Target:  5'- uCGGCGccgCUGCCGCcggCgCCGaCGUCu -3'
miRNA:   3'- cGCCGCa--GACGGCGua-GaGGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 16249 0.66 0.932025
Target:  5'- cGCuG-GUCUGCUGCuuauuccAUC-CCGUCGUCg -3'
miRNA:   3'- -CGcCgCAGACGGCG-------UAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 67677 0.66 0.927517
Target:  5'- gGCGGCGgcgGCgGCGggccCUCCAUC-UCu -3'
miRNA:   3'- -CGCCGCagaCGgCGUa---GAGGUAGcAG- -5'
16148 5' -57 NC_004065.1 + 191578 0.66 0.927517
Target:  5'- uGCGGUGaUCgGCgCGCGaaaaCCGUCGUCg -3'
miRNA:   3'- -CGCCGC-AGaCG-GCGUaga-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 229454 0.66 0.927517
Target:  5'- gGUGGCG-CUGCCGCcagCcCCGUUG-Cg -3'
miRNA:   3'- -CGCCGCaGACGGCGua-GaGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 54461 0.66 0.924412
Target:  5'- cGCGcGCgGUCUGCCGCGagCgcacgcgcagccaccUCCGUCGa- -3'
miRNA:   3'- -CGC-CG-CAGACGGCGUa-G---------------AGGUAGCag -5'
16148 5' -57 NC_004065.1 + 161649 0.66 0.922297
Target:  5'- cGCGGCGaUCU-UCGC--CUCgGUCGUCg -3'
miRNA:   3'- -CGCCGC-AGAcGGCGuaGAGgUAGCAG- -5'
16148 5' -57 NC_004065.1 + 167903 0.66 0.922297
Target:  5'- cGCGGCGacgaUGCCGC--CUCCcgCGa- -3'
miRNA:   3'- -CGCCGCag--ACGGCGuaGAGGuaGCag -5'
16148 5' -57 NC_004065.1 + 91705 0.67 0.916853
Target:  5'- cGCGGCcacgaUGuCCGCGagCUCCcgCGUCu -3'
miRNA:   3'- -CGCCGcag--AC-GGCGUa-GAGGuaGCAG- -5'
16148 5' -57 NC_004065.1 + 116259 0.67 0.916853
Target:  5'- uCGGuCGUCUGCCGCcgCggcugUCCcUCGg- -3'
miRNA:   3'- cGCC-GCAGACGGCGuaG-----AGGuAGCag -5'
16148 5' -57 NC_004065.1 + 56636 0.67 0.911188
Target:  5'- uGCGGUGgcagCgGCCGCGgcaccCUUCAcCGUCg -3'
miRNA:   3'- -CGCCGCa---GaCGGCGUa----GAGGUaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.