miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 17678 0.67 0.892879
Target:  5'- aCGGuCGUCcGUCGCGccaUCgccguggCCGUCGUCg -3'
miRNA:   3'- cGCC-GCAGaCGGCGU---AGa------GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 80973 0.68 0.850629
Target:  5'- uCGGC--CUGCCGCcg--CCGUCGUCg -3'
miRNA:   3'- cGCCGcaGACGGCGuagaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 165430 0.68 0.850629
Target:  5'- gGCgGGCGUC-GCCGCGUggUUAUCGUg -3'
miRNA:   3'- -CG-CCGCAGaCGGCGUAgaGGUAGCAg -5'
16148 5' -57 NC_004065.1 + 26052 0.68 0.865508
Target:  5'- cGCGGCGUCgaaCCGCGagccgauuuUCcCCGUCGa- -3'
miRNA:   3'- -CGCCGCAGac-GGCGU---------AGaGGUAGCag -5'
16148 5' -57 NC_004065.1 + 32893 0.68 0.865508
Target:  5'- gGCGaGCGUCUGCCGCugggcAUCccCCAcaacugguUCGUg -3'
miRNA:   3'- -CGC-CGCAGACGGCG-----UAGa-GGU--------AGCAg -5'
16148 5' -57 NC_004065.1 + 203515 0.68 0.87195
Target:  5'- gGCGGgGUCcGUCGCGugacaugUCUUCuUCGUCu -3'
miRNA:   3'- -CGCCgCAGaCGGCGU-------AGAGGuAGCAG- -5'
16148 5' -57 NC_004065.1 + 131764 0.68 0.872656
Target:  5'- gGCGcGCGcCcaggGCCGcCGUCccgagCCGUCGUCg -3'
miRNA:   3'- -CGC-CGCaGa---CGGC-GUAGa----GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 157012 0.68 0.879604
Target:  5'- -gGGCGUCUcgcucgugGCgGCAUCgucgCCcUCGUCc -3'
miRNA:   3'- cgCCGCAGA--------CGgCGUAGa---GGuAGCAG- -5'
16148 5' -57 NC_004065.1 + 159973 0.68 0.850629
Target:  5'- cGCGGCGaUCgugGCCGU--CUCCAcCGUg -3'
miRNA:   3'- -CGCCGC-AGa--CGGCGuaGAGGUaGCAg -5'
16148 5' -57 NC_004065.1 + 60893 0.68 0.858163
Target:  5'- cGCGaGCGUCUcgggaacugcugGCCGCGg--CCcgCGUCu -3'
miRNA:   3'- -CGC-CGCAGA------------CGGCGUagaGGuaGCAG- -5'
16148 5' -57 NC_004065.1 + 171409 0.68 0.861124
Target:  5'- cCGGCGacUCcGCCGCGcgcgucgaucucgacUCcgCCGUCGUCg -3'
miRNA:   3'- cGCCGC--AGaCGGCGU---------------AGa-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 147138 0.68 0.858163
Target:  5'- uGCccCGUCUGCCGCAUCaCCGUgGcCa -3'
miRNA:   3'- -CGccGCAGACGGCGUAGaGGUAgCaG- -5'
16148 5' -57 NC_004065.1 + 76751 0.68 0.842909
Target:  5'- cGCGGCGcCgGCgGCcUCgUCAUCGUCc -3'
miRNA:   3'- -CGCCGCaGaCGgCGuAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 30898 0.68 0.872656
Target:  5'- -gGGCGUCgggGUCGCAcucgUgUCCGUCGa- -3'
miRNA:   3'- cgCCGCAGa--CGGCGU----AgAGGUAGCag -5'
16148 5' -57 NC_004065.1 + 225908 0.68 0.871242
Target:  5'- aCGGUGguuguucugcugUUGCCGCuUC-CCGUCGUCu -3'
miRNA:   3'- cGCCGCa-----------GACGGCGuAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 154171 0.68 0.872656
Target:  5'- gGCGGCGgCUGuuGCuggcUCgCCGUCGcCa -3'
miRNA:   3'- -CGCCGCaGACggCGu---AGaGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 62674 0.68 0.879604
Target:  5'- aGCGGCGacccugUCUGCCGCcgCgUUgGUCG-Cg -3'
miRNA:   3'- -CGCCGC------AGACGGCGuaG-AGgUAGCaG- -5'
16148 5' -57 NC_004065.1 + 152923 0.68 0.879604
Target:  5'- gGCGGCG-CUGCCGCcgCggcaaAUCGa- -3'
miRNA:   3'- -CGCCGCaGACGGCGuaGagg--UAGCag -5'
16148 5' -57 NC_004065.1 + 94441 0.68 0.869107
Target:  5'- aGCGGCGcguguguUCgaaggaggugacgGCCGCcUCcCCGUCGUCc -3'
miRNA:   3'- -CGCCGC-------AGa------------CGGCGuAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 67611 0.69 0.826942
Target:  5'- cGCGGCGUCcGUCGCAccguacggcguUCgagaugCCGguggCGUCg -3'
miRNA:   3'- -CGCCGCAGaCGGCGU-----------AGa-----GGUa---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.