miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 202876 0.71 0.689414
Target:  5'- cGCGGCGUgUGuuGCucggacccggcucGUCguugUCAUCGUCg -3'
miRNA:   3'- -CGCCGCAgACggCG-------------UAGa---GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 121088 0.7 0.747781
Target:  5'- uCGGCGUaCUGCCGCAggcgcagCgcgCUuUCGUCg -3'
miRNA:   3'- cGCCGCA-GACGGCGUa------Ga--GGuAGCAG- -5'
16148 5' -57 NC_004065.1 + 144989 0.7 0.793084
Target:  5'- uGCGGCGUCagauggugGaUCGCGUUguaCAUCGUCa -3'
miRNA:   3'- -CGCCGCAGa-------C-GGCGUAGag-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 196978 0.7 0.784262
Target:  5'- gGCGGCGc---CCGCAUCcucguaUCCGUCGUUg -3'
miRNA:   3'- -CGCCGCagacGGCGUAG------AGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 149061 0.7 0.784262
Target:  5'- gGCGGCGgcagGCCG-AUCggggUCGUCGUCa -3'
miRNA:   3'- -CGCCGCaga-CGGCgUAGa---GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 118204 0.7 0.784262
Target:  5'- uUGGCGcggCUGaCGCA-UUCCGUCGUCg -3'
miRNA:   3'- cGCCGCa--GACgGCGUaGAGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 27287 0.7 0.775312
Target:  5'- gGCGGCG-CcGCCgacgacGCGUCUaUCGUCGUCg -3'
miRNA:   3'- -CGCCGCaGaCGG------CGUAGA-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 59906 0.7 0.773508
Target:  5'- aGCGGCGUCUGCuCGagaaagaCGUUGUCg -3'
miRNA:   3'- -CGCCGCAGACG-GCguagag-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 191866 0.7 0.747781
Target:  5'- cGCGGa-UC-GCCGCGUCUuCCAgCGUCa -3'
miRNA:   3'- -CGCCgcAGaCGGCGUAGA-GGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 119544 0.69 0.826942
Target:  5'- gGCGGcCGUCUGCUGCAgCagCAUguaGUCg -3'
miRNA:   3'- -CGCC-GCAGACGGCGUaGagGUAg--CAG- -5'
16148 5' -57 NC_004065.1 + 54568 0.69 0.826942
Target:  5'- cGCGGCGcggagaCUGCuguugucuCGCGcUCUCCGcUCGUCg -3'
miRNA:   3'- -CGCCGCa-----GACG--------GCGU-AGAGGU-AGCAG- -5'
16148 5' -57 NC_004065.1 + 120628 0.69 0.826942
Target:  5'- cGUGGCGUCcGCCGCGg--CCGacgggcUUGUCu -3'
miRNA:   3'- -CGCCGCAGaCGGCGUagaGGU------AGCAG- -5'
16148 5' -57 NC_004065.1 + 210870 0.69 0.826942
Target:  5'- aGCGGCaUCgGCaGCAUCgUCGUCGUCc -3'
miRNA:   3'- -CGCCGcAGaCGgCGUAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 62874 0.69 0.80177
Target:  5'- uGUGGCgGUCUGCUgGCcUCccugcCCGUCGUCa -3'
miRNA:   3'- -CGCCG-CAGACGG-CGuAGa----GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 67611 0.69 0.826942
Target:  5'- cGCGGCGUCcGUCGCAccguacggcguUCgagaugCCGguggCGUCg -3'
miRNA:   3'- -CGCCGCAGaCGGCGU-----------AGa-----GGUa---GCAG- -5'
16148 5' -57 NC_004065.1 + 178689 0.69 0.80177
Target:  5'- aGCuGCGUCUGCagCGCGUCaUCAUCGa- -3'
miRNA:   3'- -CGcCGCAGACG--GCGUAGaGGUAGCag -5'
16148 5' -57 NC_004065.1 + 30898 0.68 0.872656
Target:  5'- -gGGCGUCgggGUCGCAcucgUgUCCGUCGa- -3'
miRNA:   3'- cgCCGCAGa--CGGCGU----AgAGGUAGCag -5'
16148 5' -57 NC_004065.1 + 62674 0.68 0.879604
Target:  5'- aGCGGCGacccugUCUGCCGCcgCgUUgGUCG-Cg -3'
miRNA:   3'- -CGCCGC------AGACGGCGuaG-AGgUAGCaG- -5'
16148 5' -57 NC_004065.1 + 76751 0.68 0.842909
Target:  5'- cGCGGCGcCgGCgGCcUCgUCAUCGUCc -3'
miRNA:   3'- -CGCCGCaGaCGgCGuAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 152923 0.68 0.879604
Target:  5'- gGCGGCG-CUGCCGCcgCggcaaAUCGa- -3'
miRNA:   3'- -CGCCGCaGACGGCGuaGagg--UAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.