miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 146766 1.12 0.002497
Target:  5'- gGCGGCGUCUGCCGCAUCUCCAUCGUCg -3'
miRNA:   3'- -CGCCGCAGACGGCGUAGAGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 28481 0.78 0.359702
Target:  5'- uGUGGCGUCUggccgacagcGCCGCGgagCUCCGUCG-Ca -3'
miRNA:   3'- -CGCCGCAGA----------CGGCGUa--GAGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 78897 0.78 0.367426
Target:  5'- cGCGGCGUUgccGCCGCcuUCgcugcugCCGUCGUCg -3'
miRNA:   3'- -CGCCGCAGa--CGGCGu-AGa------GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 169475 0.77 0.416108
Target:  5'- cCGGCGUCU-CCGuCGUCUCCGgcggcuUCGUCg -3'
miRNA:   3'- cGCCGCAGAcGGC-GUAGAGGU------AGCAG- -5'
16148 5' -57 NC_004065.1 + 107461 0.75 0.486759
Target:  5'- -gGGCGUCUGCCGCAggaggaaggCUCCGaCGg- -3'
miRNA:   3'- cgCCGCAGACGGCGUa--------GAGGUaGCag -5'
16148 5' -57 NC_004065.1 + 217312 0.74 0.533678
Target:  5'- cGUGGcCGUUUaucGCCGCAUCUCUugccgacguucGUCGUCg -3'
miRNA:   3'- -CGCC-GCAGA---CGGCGUAGAGG-----------UAGCAG- -5'
16148 5' -57 NC_004065.1 + 99972 0.74 0.552903
Target:  5'- cGCGGCGUgCUcggGCCGCGgg-UCGUCGUCu -3'
miRNA:   3'- -CGCCGCA-GA---CGGCGUagaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 126597 0.73 0.601751
Target:  5'- -aGGUGUCgaucagGCCGCG-CUCCAUCG-Cg -3'
miRNA:   3'- cgCCGCAGa-----CGGCGUaGAGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 109881 0.73 0.621481
Target:  5'- cCGGCGUCgccgcgGCCGCGUCggggggucCCGgcUCGUCc -3'
miRNA:   3'- cGCCGCAGa-----CGGCGUAGa-------GGU--AGCAG- -5'
16148 5' -57 NC_004065.1 + 207520 0.73 0.621481
Target:  5'- aGCGGuCGUCgguccuccucGCCGCGcgCUCCGcgUCGUCg -3'
miRNA:   3'- -CGCC-GCAGa---------CGGCGUa-GAGGU--AGCAG- -5'
16148 5' -57 NC_004065.1 + 161844 0.72 0.63136
Target:  5'- aGCGGCGgg-GCCGaCAgCUCCGUCG-Cg -3'
miRNA:   3'- -CGCCGCagaCGGC-GUaGAGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 66613 0.72 0.64124
Target:  5'- cGCGGCG-UUGCCGaCGcUCUCggcgaCAUCGUCg -3'
miRNA:   3'- -CGCCGCaGACGGC-GU-AGAG-----GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 211954 0.72 0.651114
Target:  5'- uGCGGCGgucgCUGCCGC-----CAUCGUCg -3'
miRNA:   3'- -CGCCGCa---GACGGCGuagagGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 120745 0.72 0.658017
Target:  5'- uCGGCGUgacccaggacacugCUGCCGCGagUCgUCAUCGUCa -3'
miRNA:   3'- cGCCGCA--------------GACGGCGU--AGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 151603 0.72 0.659988
Target:  5'- uGCGGCGUCauccuccgacacaUGCUGCAcg-UCGUCGUCu -3'
miRNA:   3'- -CGCCGCAG-------------ACGGCGUagaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 130604 0.72 0.660973
Target:  5'- gGCGGCGUCUGCCGC-UCgggCCccugcugCGa- -3'
miRNA:   3'- -CGCCGCAGACGGCGuAGa--GGua-----GCag -5'
16148 5' -57 NC_004065.1 + 173493 0.72 0.67081
Target:  5'- uGCGGUGUC-GCCGCcacucugaagaaAUCUCgCGUcCGUCg -3'
miRNA:   3'- -CGCCGCAGaCGGCG------------UAGAG-GUA-GCAG- -5'
16148 5' -57 NC_004065.1 + 202876 0.71 0.689414
Target:  5'- cGCGGCGUgUGuuGCucggacccggcucGUCguugUCAUCGUCg -3'
miRNA:   3'- -CGCCGCAgACggCG-------------UAGa---GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 75334 0.71 0.690389
Target:  5'- cGCGGCGUCcGUCGCGUUcgUCC-UCGa- -3'
miRNA:   3'- -CGCCGCAGaCGGCGUAG--AGGuAGCag -5'
16148 5' -57 NC_004065.1 + 195407 0.71 0.701085
Target:  5'- aCGGCGagccguacacguacgCUcccGCCGCGUCgCCGUCGUCg -3'
miRNA:   3'- cGCCGCa--------------GA---CGGCGUAGaGGUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.