miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 145462 0.67 0.911188
Target:  5'- aUGGCGUCggggGCUGCcggUCCAUCuGUCc -3'
miRNA:   3'- cGCCGCAGa---CGGCGuagAGGUAG-CAG- -5'
16148 5' -57 NC_004065.1 + 199004 0.67 0.911188
Target:  5'- aUGGCGUUcGCCGuCAccggccUCUCCAUC-UCg -3'
miRNA:   3'- cGCCGCAGaCGGC-GU------AGAGGUAGcAG- -5'
16148 5' -57 NC_004065.1 + 110186 0.67 0.911188
Target:  5'- uGCGGCGgccgCgacgcGCCGCcgC-CCGUCGa- -3'
miRNA:   3'- -CGCCGCa---Ga----CGGCGuaGaGGUAGCag -5'
16148 5' -57 NC_004065.1 + 132492 0.67 0.911188
Target:  5'- cGCuGGCG-CUGaUCGCGUCguucgcgCgCAUCGUCg -3'
miRNA:   3'- -CG-CCGCaGAC-GGCGUAGa------G-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 141929 0.67 0.911188
Target:  5'- aGCGGUGUCUGUauCGCcgUUCgggGUUGUCu -3'
miRNA:   3'- -CGCCGCAGACG--GCGuaGAGg--UAGCAG- -5'
16148 5' -57 NC_004065.1 + 38562 0.67 0.911188
Target:  5'- cGUGGUGg-UGCCGCAcCUCgG-CGUCg -3'
miRNA:   3'- -CGCCGCagACGGCGUaGAGgUaGCAG- -5'
16148 5' -57 NC_004065.1 + 3799 0.67 0.911188
Target:  5'- cUGGCGUgUGCCGUGUUcaacucgucuUCCGagGUCu -3'
miRNA:   3'- cGCCGCAgACGGCGUAG----------AGGUagCAG- -5'
16148 5' -57 NC_004065.1 + 59594 0.67 0.910029
Target:  5'- gGCGGCGUCcuucgucgauccGCCGCAgcuacacuUCUugCCGUUGUUg -3'
miRNA:   3'- -CGCCGCAGa-----------CGGCGU--------AGA--GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 12402 0.67 0.905303
Target:  5'- aGCcGCGaUCgUGCuCGUAUCUgCUAUCGUCg -3'
miRNA:   3'- -CGcCGC-AG-ACG-GCGUAGA-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 202751 0.67 0.905303
Target:  5'- gGCGGCG-CcGCCG-GUCUCU-UCGUCc -3'
miRNA:   3'- -CGCCGCaGaCGGCgUAGAGGuAGCAG- -5'
16148 5' -57 NC_004065.1 + 77109 0.67 0.905303
Target:  5'- cGCGGCGgcagcGCCGCcga--CAUCGUCa -3'
miRNA:   3'- -CGCCGCaga--CGGCGuagagGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 153981 0.67 0.899199
Target:  5'- cGCGGuCGUCgugaucGuuGuCGUCUCUGUCGUg -3'
miRNA:   3'- -CGCC-GCAGa-----CggC-GUAGAGGUAGCAg -5'
16148 5' -57 NC_004065.1 + 184397 0.67 0.899199
Target:  5'- aCGGUGUCgcggacGCCGUGUCUCgAccguuccccUCGUCc -3'
miRNA:   3'- cGCCGCAGa-----CGGCGUAGAGgU---------AGCAG- -5'
16148 5' -57 NC_004065.1 + 222694 0.67 0.898576
Target:  5'- aCGGC-UCcGCCGCGUCcgguaccaccggcUCgAUCGUCa -3'
miRNA:   3'- cGCCGcAGaCGGCGUAG-------------AGgUAGCAG- -5'
16148 5' -57 NC_004065.1 + 17678 0.67 0.892879
Target:  5'- aCGGuCGUCcGUCGCGccaUCgccguggCCGUCGUCg -3'
miRNA:   3'- cGCC-GCAGaCGGCGU---AGa------GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 53845 0.67 0.892879
Target:  5'- aGCuGCcUCcGCCGcCGUCgCCAUCGUCu -3'
miRNA:   3'- -CGcCGcAGaCGGC-GUAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 22920 0.67 0.892879
Target:  5'- gGCGGCgGUCgGCgGUuccGUCUC-GUCGUCa -3'
miRNA:   3'- -CGCCG-CAGaCGgCG---UAGAGgUAGCAG- -5'
16148 5' -57 NC_004065.1 + 104163 0.67 0.892879
Target:  5'- gGCGGUGUCggucGCCGCuUCggugCCGgauacgacCGUCa -3'
miRNA:   3'- -CGCCGCAGa---CGGCGuAGa---GGUa-------GCAG- -5'
16148 5' -57 NC_004065.1 + 150230 0.67 0.892879
Target:  5'- aGCGGCGUCgucaggaucaGCCGCucCUCCucgaggAUCGUg -3'
miRNA:   3'- -CGCCGCAGa---------CGGCGuaGAGG------UAGCAg -5'
16148 5' -57 NC_004065.1 + 160993 0.67 0.886346
Target:  5'- gGCGGCGggcugCUGCUGCua-UCCGUgaucaUGUCc -3'
miRNA:   3'- -CGCCGCa----GACGGCGuagAGGUA-----GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.