miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 3799 0.67 0.911188
Target:  5'- cUGGCGUgUGCCGUGUUcaacucgucuUCCGagGUCu -3'
miRNA:   3'- cGCCGCAgACGGCGUAG----------AGGUagCAG- -5'
16148 5' -57 NC_004065.1 + 12402 0.67 0.905303
Target:  5'- aGCcGCGaUCgUGCuCGUAUCUgCUAUCGUCg -3'
miRNA:   3'- -CGcCGC-AG-ACG-GCGUAGA-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 16249 0.66 0.932025
Target:  5'- cGCuG-GUCUGCUGCuuauuccAUC-CCGUCGUCg -3'
miRNA:   3'- -CGcCgCAGACGGCG-------UAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 17678 0.67 0.892879
Target:  5'- aCGGuCGUCcGUCGCGccaUCgccguggCCGUCGUCg -3'
miRNA:   3'- cGCC-GCAGaCGGCGU---AGa------GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 21731 0.66 0.941844
Target:  5'- -aGGUuucgCUGCCGCuAUCUUgguaCGUCGUCa -3'
miRNA:   3'- cgCCGca--GACGGCG-UAGAG----GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 22920 0.67 0.892879
Target:  5'- gGCGGCgGUCgGCgGUuccGUCUC-GUCGUCa -3'
miRNA:   3'- -CGCCG-CAGaCGgCG---UAGAGgUAGCAG- -5'
16148 5' -57 NC_004065.1 + 26052 0.68 0.865508
Target:  5'- cGCGGCGUCgaaCCGCGagccgauuuUCcCCGUCGa- -3'
miRNA:   3'- -CGCCGCAGac-GGCGU---------AGaGGUAGCag -5'
16148 5' -57 NC_004065.1 + 27287 0.7 0.775312
Target:  5'- gGCGGCG-CcGCCgacgacGCGUCUaUCGUCGUCg -3'
miRNA:   3'- -CGCCGCaGaCGG------CGUAGA-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 28481 0.78 0.359702
Target:  5'- uGUGGCGUCUggccgacagcGCCGCGgagCUCCGUCG-Ca -3'
miRNA:   3'- -CGCCGCAGA----------CGGCGUa--GAGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 30898 0.68 0.872656
Target:  5'- -gGGCGUCgggGUCGCAcucgUgUCCGUCGa- -3'
miRNA:   3'- cgCCGCAGa--CGGCGU----AgAGGUAGCag -5'
16148 5' -57 NC_004065.1 + 32893 0.68 0.865508
Target:  5'- gGCGaGCGUCUGCCGCugggcAUCccCCAcaacugguUCGUg -3'
miRNA:   3'- -CGC-CGCAGACGGCG-----UAGa-GGU--------AGCAg -5'
16148 5' -57 NC_004065.1 + 35934 0.66 0.941844
Target:  5'- uCGGUGcUCUGUCGCGg--CCgcagGUCGUCg -3'
miRNA:   3'- cGCCGC-AGACGGCGUagaGG----UAGCAG- -5'
16148 5' -57 NC_004065.1 + 38562 0.67 0.911188
Target:  5'- cGUGGUGg-UGCCGCAcCUCgG-CGUCg -3'
miRNA:   3'- -CGCCGCagACGGCGUaGAGgUaGCAG- -5'
16148 5' -57 NC_004065.1 + 53845 0.67 0.892879
Target:  5'- aGCuGCcUCcGCCGcCGUCgCCAUCGUCu -3'
miRNA:   3'- -CGcCGcAGaCGGC-GUAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 54461 0.66 0.924412
Target:  5'- cGCGcGCgGUCUGCCGCGagCgcacgcgcagccaccUCCGUCGa- -3'
miRNA:   3'- -CGC-CG-CAGACGGCGUa-G---------------AGGUAGCag -5'
16148 5' -57 NC_004065.1 + 54568 0.69 0.826942
Target:  5'- cGCGGCGcggagaCUGCuguugucuCGCGcUCUCCGcUCGUCg -3'
miRNA:   3'- -CGCCGCa-----GACG--------GCGU-AGAGGU-AGCAG- -5'
16148 5' -57 NC_004065.1 + 56636 0.67 0.911188
Target:  5'- uGCGGUGgcagCgGCCGCGgcaccCUUCAcCGUCg -3'
miRNA:   3'- -CGCCGCa---GaCGGCGUa----GAGGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 59594 0.67 0.910029
Target:  5'- gGCGGCGUCcuucgucgauccGCCGCAgcuacacuUCUugCCGUUGUUg -3'
miRNA:   3'- -CGCCGCAGa-----------CGGCGU--------AGA--GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 59906 0.7 0.773508
Target:  5'- aGCGGCGUCUGCuCGagaaagaCGUUGUCg -3'
miRNA:   3'- -CGCCGCAGACG-GCguagag-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 60893 0.68 0.858163
Target:  5'- cGCGaGCGUCUcgggaacugcugGCCGCGg--CCcgCGUCu -3'
miRNA:   3'- -CGC-CGCAGA------------CGGCGUagaGGuaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.