Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16148 | 5' | -57 | NC_004065.1 | + | 110186 | 0.67 | 0.911188 |
Target: 5'- uGCGGCGgccgCgacgcGCCGCcgC-CCGUCGa- -3' miRNA: 3'- -CGCCGCa---Ga----CGGCGuaGaGGUAGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 116259 | 0.67 | 0.916853 |
Target: 5'- uCGGuCGUCUGCCGCcgCggcugUCCcUCGg- -3' miRNA: 3'- cGCC-GCAGACGGCGuaG-----AGGuAGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 118204 | 0.7 | 0.784262 |
Target: 5'- uUGGCGcggCUGaCGCA-UUCCGUCGUCg -3' miRNA: 3'- cGCCGCa--GACgGCGUaGAGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 119544 | 0.69 | 0.826942 |
Target: 5'- gGCGGcCGUCUGCUGCAgCagCAUguaGUCg -3' miRNA: 3'- -CGCC-GCAGACGGCGUaGagGUAg--CAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 120628 | 0.69 | 0.826942 |
Target: 5'- cGUGGCGUCcGCCGCGg--CCGacgggcUUGUCu -3' miRNA: 3'- -CGCCGCAGaCGGCGUagaGGU------AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 120704 | 0.66 | 0.941844 |
Target: 5'- aGCGGC-UC-GcCCGCuuucagCUCCGUCGUa -3' miRNA: 3'- -CGCCGcAGaC-GGCGua----GAGGUAGCAg -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 120745 | 0.72 | 0.658017 |
Target: 5'- uCGGCGUgacccaggacacugCUGCCGCGagUCgUCAUCGUCa -3' miRNA: 3'- cGCCGCA--------------GACGGCGU--AGaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 121088 | 0.7 | 0.747781 |
Target: 5'- uCGGCGUaCUGCCGCAggcgcagCgcgCUuUCGUCg -3' miRNA: 3'- cGCCGCA-GACGGCGUa------Ga--GGuAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 125466 | 0.66 | 0.932515 |
Target: 5'- cGCGGCGUgcacagcgGCCGCAccugcccguUCUCCGU-GUg -3' miRNA: 3'- -CGCCGCAga------CGGCGU---------AGAGGUAgCAg -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 126597 | 0.73 | 0.601751 |
Target: 5'- -aGGUGUCgaucagGCCGCG-CUCCAUCG-Cg -3' miRNA: 3'- cgCCGCAGa-----CGGCGUaGAGGUAGCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 130604 | 0.72 | 0.660973 |
Target: 5'- gGCGGCGUCUGCCGC-UCgggCCccugcugCGa- -3' miRNA: 3'- -CGCCGCAGACGGCGuAGa--GGua-----GCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 131764 | 0.68 | 0.872656 |
Target: 5'- gGCGcGCGcCcaggGCCGcCGUCccgagCCGUCGUCg -3' miRNA: 3'- -CGC-CGCaGa---CGGC-GUAGa----GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 132492 | 0.67 | 0.911188 |
Target: 5'- cGCuGGCG-CUGaUCGCGUCguucgcgCgCAUCGUCg -3' miRNA: 3'- -CG-CCGCaGAC-GGCGUAGa------G-GUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 141929 | 0.67 | 0.911188 |
Target: 5'- aGCGGUGUCUGUauCGCcgUUCgggGUUGUCu -3' miRNA: 3'- -CGCCGCAGACG--GCGuaGAGg--UAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 144989 | 0.7 | 0.793084 |
Target: 5'- uGCGGCGUCagauggugGaUCGCGUUguaCAUCGUCa -3' miRNA: 3'- -CGCCGCAGa-------C-GGCGUAGag-GUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 145462 | 0.67 | 0.911188 |
Target: 5'- aUGGCGUCggggGCUGCcggUCCAUCuGUCc -3' miRNA: 3'- cGCCGCAGa---CGGCGuagAGGUAG-CAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 146766 | 1.12 | 0.002497 |
Target: 5'- gGCGGCGUCUGCCGCAUCUCCAUCGUCg -3' miRNA: 3'- -CGCCGCAGACGGCGUAGAGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 147138 | 0.68 | 0.858163 |
Target: 5'- uGCccCGUCUGCCGCAUCaCCGUgGcCa -3' miRNA: 3'- -CGccGCAGACGGCGUAGaGGUAgCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 149061 | 0.7 | 0.784262 |
Target: 5'- gGCGGCGgcagGCCG-AUCggggUCGUCGUCa -3' miRNA: 3'- -CGCCGCaga-CGGCgUAGa---GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 150230 | 0.67 | 0.892879 |
Target: 5'- aGCGGCGUCgucaggaucaGCCGCucCUCCucgaggAUCGUg -3' miRNA: 3'- -CGCCGCAGa---------CGGCGuaGAGG------UAGCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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