miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 151603 0.72 0.659988
Target:  5'- uGCGGCGUCauccuccgacacaUGCUGCAcg-UCGUCGUCu -3'
miRNA:   3'- -CGCCGCAG-------------ACGGCGUagaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 152923 0.68 0.879604
Target:  5'- gGCGGCG-CUGCCGCcgCggcaaAUCGa- -3'
miRNA:   3'- -CGCCGCaGACGGCGuaGagg--UAGCag -5'
16148 5' -57 NC_004065.1 + 153981 0.67 0.899199
Target:  5'- cGCGGuCGUCgugaucGuuGuCGUCUCUGUCGUg -3'
miRNA:   3'- -CGCC-GCAGa-----CggC-GUAGAGGUAGCAg -5'
16148 5' -57 NC_004065.1 + 154171 0.68 0.872656
Target:  5'- gGCGGCGgCUGuuGCuggcUCgCCGUCGcCa -3'
miRNA:   3'- -CGCCGCaGACggCGu---AGaGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 157012 0.68 0.879604
Target:  5'- -gGGCGUCUcgcucgugGCgGCAUCgucgCCcUCGUCc -3'
miRNA:   3'- cgCCGCAGA--------CGgCGUAGa---GGuAGCAG- -5'
16148 5' -57 NC_004065.1 + 159973 0.68 0.850629
Target:  5'- cGCGGCGaUCgugGCCGU--CUCCAcCGUg -3'
miRNA:   3'- -CGCCGC-AGa--CGGCGuaGAGGUaGCAg -5'
16148 5' -57 NC_004065.1 + 160993 0.67 0.886346
Target:  5'- gGCGGCGggcugCUGCUGCua-UCCGUgaucaUGUCc -3'
miRNA:   3'- -CGCCGCa----GACGGCGuagAGGUA-----GCAG- -5'
16148 5' -57 NC_004065.1 + 161649 0.66 0.922297
Target:  5'- cGCGGCGaUCU-UCGC--CUCgGUCGUCg -3'
miRNA:   3'- -CGCCGC-AGAcGGCGuaGAGgUAGCAG- -5'
16148 5' -57 NC_004065.1 + 161844 0.72 0.63136
Target:  5'- aGCGGCGgg-GCCGaCAgCUCCGUCG-Cg -3'
miRNA:   3'- -CGCCGCagaCGGC-GUaGAGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 164489 0.66 0.93729
Target:  5'- cGCGcccaGCGUCaGCUGCGUgaaCUCUucuUCGUCg -3'
miRNA:   3'- -CGC----CGCAGaCGGCGUA---GAGGu--AGCAG- -5'
16148 5' -57 NC_004065.1 + 165430 0.68 0.850629
Target:  5'- gGCgGGCGUC-GCCGCGUggUUAUCGUg -3'
miRNA:   3'- -CG-CCGCAGaCGGCGUAgaGGUAGCAg -5'
16148 5' -57 NC_004065.1 + 167903 0.66 0.922297
Target:  5'- cGCGGCGacgaUGCCGC--CUCCcgCGa- -3'
miRNA:   3'- -CGCCGCag--ACGGCGuaGAGGuaGCag -5'
16148 5' -57 NC_004065.1 + 169475 0.77 0.416108
Target:  5'- cCGGCGUCU-CCGuCGUCUCCGgcggcuUCGUCg -3'
miRNA:   3'- cGCCGCAGAcGGC-GUAGAGGU------AGCAG- -5'
16148 5' -57 NC_004065.1 + 171409 0.68 0.861124
Target:  5'- cCGGCGacUCcGCCGCGcgcgucgaucucgacUCcgCCGUCGUCg -3'
miRNA:   3'- cGCCGC--AGaCGGCGU---------------AGa-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 173493 0.72 0.67081
Target:  5'- uGCGGUGUC-GCCGCcacucugaagaaAUCUCgCGUcCGUCg -3'
miRNA:   3'- -CGCCGCAGaCGGCG------------UAGAG-GUA-GCAG- -5'
16148 5' -57 NC_004065.1 + 178689 0.69 0.80177
Target:  5'- aGCuGCGUCUGCagCGCGUCaUCAUCGa- -3'
miRNA:   3'- -CGcCGCAGACG--GCGUAGaGGUAGCag -5'
16148 5' -57 NC_004065.1 + 184397 0.67 0.899199
Target:  5'- aCGGUGUCgcggacGCCGUGUCUCgAccguuccccUCGUCc -3'
miRNA:   3'- cGCCGCAGa-----CGGCGUAGAGgU---------AGCAG- -5'
16148 5' -57 NC_004065.1 + 186860 0.71 0.728941
Target:  5'- uCGGUGUCUGCCGU-UC-CCGcCGUCc -3'
miRNA:   3'- cGCCGCAGACGGCGuAGaGGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 191578 0.66 0.927517
Target:  5'- uGCGGUGaUCgGCgCGCGaaaaCCGUCGUCg -3'
miRNA:   3'- -CGCCGC-AGaCG-GCGUaga-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 191866 0.7 0.747781
Target:  5'- cGCGGa-UC-GCCGCGUCUuCCAgCGUCa -3'
miRNA:   3'- -CGCCgcAGaCGGCGUAGA-GGUaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.