miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 229454 0.66 0.927517
Target:  5'- gGUGGCG-CUGCCGCcagCcCCGUUG-Cg -3'
miRNA:   3'- -CGCCGCaGACGGCGua-GaGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 225908 0.68 0.871242
Target:  5'- aCGGUGguuguucugcugUUGCCGCuUC-CCGUCGUCu -3'
miRNA:   3'- cGCCGCa-----------GACGGCGuAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 222694 0.67 0.898576
Target:  5'- aCGGC-UCcGCCGCGUCcgguaccaccggcUCgAUCGUCa -3'
miRNA:   3'- cGCCGcAGaCGGCGUAG-------------AGgUAGCAG- -5'
16148 5' -57 NC_004065.1 + 217312 0.74 0.533678
Target:  5'- cGUGGcCGUUUaucGCCGCAUCUCUugccgacguucGUCGUCg -3'
miRNA:   3'- -CGCC-GCAGA---CGGCGUAGAGG-----------UAGCAG- -5'
16148 5' -57 NC_004065.1 + 211954 0.72 0.651114
Target:  5'- uGCGGCGgucgCUGCCGC-----CAUCGUCg -3'
miRNA:   3'- -CGCCGCa---GACGGCGuagagGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 210870 0.69 0.826942
Target:  5'- aGCGGCaUCgGCaGCAUCgUCGUCGUCc -3'
miRNA:   3'- -CGCCGcAGaCGgCGUAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 207626 0.65 0.944901
Target:  5'- aCGGUGaccagggacagcUCcaUGCCGCAcgcggccggcucccUCUCUGUCGUCg -3'
miRNA:   3'- cGCCGC------------AG--ACGGCGU--------------AGAGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 207520 0.73 0.621481
Target:  5'- aGCGGuCGUCgguccuccucGCCGCGcgCUCCGcgUCGUCg -3'
miRNA:   3'- -CGCC-GCAGa---------CGGCGUa-GAGGU--AGCAG- -5'
16148 5' -57 NC_004065.1 + 203515 0.68 0.87195
Target:  5'- gGCGGgGUCcGUCGCGugacaugUCUUCuUCGUCu -3'
miRNA:   3'- -CGCCgCAGaCGGCGU-------AGAGGuAGCAG- -5'
16148 5' -57 NC_004065.1 + 202876 0.71 0.689414
Target:  5'- cGCGGCGUgUGuuGCucggacccggcucGUCguugUCAUCGUCg -3'
miRNA:   3'- -CGCCGCAgACggCG-------------UAGa---GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 202751 0.67 0.905303
Target:  5'- gGCGGCG-CcGCCG-GUCUCU-UCGUCc -3'
miRNA:   3'- -CGCCGCaGaCGGCgUAGAGGuAGCAG- -5'
16148 5' -57 NC_004065.1 + 200320 0.67 0.886346
Target:  5'- gGCGGCGUCcGCCGC-UCgaCCggCGa- -3'
miRNA:   3'- -CGCCGCAGaCGGCGuAGa-GGuaGCag -5'
16148 5' -57 NC_004065.1 + 199004 0.67 0.911188
Target:  5'- aUGGCGUUcGCCGuCAccggccUCUCCAUC-UCg -3'
miRNA:   3'- cGCCGCAGaCGGC-GU------AGAGGUAGcAG- -5'
16148 5' -57 NC_004065.1 + 196978 0.7 0.784262
Target:  5'- gGCGGCGc---CCGCAUCcucguaUCCGUCGUUg -3'
miRNA:   3'- -CGCCGCagacGGCGUAG------AGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 195407 0.71 0.701085
Target:  5'- aCGGCGagccguacacguacgCUcccGCCGCGUCgCCGUCGUCg -3'
miRNA:   3'- cGCCGCa--------------GA---CGGCGUAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 191866 0.7 0.747781
Target:  5'- cGCGGa-UC-GCCGCGUCUuCCAgCGUCa -3'
miRNA:   3'- -CGCCgcAGaCGGCGUAGA-GGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 191578 0.66 0.927517
Target:  5'- uGCGGUGaUCgGCgCGCGaaaaCCGUCGUCg -3'
miRNA:   3'- -CGCCGC-AGaCG-GCGUaga-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 186860 0.71 0.728941
Target:  5'- uCGGUGUCUGCCGU-UC-CCGcCGUCc -3'
miRNA:   3'- cGCCGCAGACGGCGuAGaGGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 184397 0.67 0.899199
Target:  5'- aCGGUGUCgcggacGCCGUGUCUCgAccguuccccUCGUCc -3'
miRNA:   3'- cGCCGCAGa-----CGGCGUAGAGgU---------AGCAG- -5'
16148 5' -57 NC_004065.1 + 178689 0.69 0.80177
Target:  5'- aGCuGCGUCUGCagCGCGUCaUCAUCGa- -3'
miRNA:   3'- -CGcCGCAGACG--GCGUAGaGGUAGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.