Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16148 | 5' | -57 | NC_004065.1 | + | 173493 | 0.72 | 0.67081 |
Target: 5'- uGCGGUGUC-GCCGCcacucugaagaaAUCUCgCGUcCGUCg -3' miRNA: 3'- -CGCCGCAGaCGGCG------------UAGAG-GUA-GCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 171409 | 0.68 | 0.861124 |
Target: 5'- cCGGCGacUCcGCCGCGcgcgucgaucucgacUCcgCCGUCGUCg -3' miRNA: 3'- cGCCGC--AGaCGGCGU---------------AGa-GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 169475 | 0.77 | 0.416108 |
Target: 5'- cCGGCGUCU-CCGuCGUCUCCGgcggcuUCGUCg -3' miRNA: 3'- cGCCGCAGAcGGC-GUAGAGGU------AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 167903 | 0.66 | 0.922297 |
Target: 5'- cGCGGCGacgaUGCCGC--CUCCcgCGa- -3' miRNA: 3'- -CGCCGCag--ACGGCGuaGAGGuaGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 165430 | 0.68 | 0.850629 |
Target: 5'- gGCgGGCGUC-GCCGCGUggUUAUCGUg -3' miRNA: 3'- -CG-CCGCAGaCGGCGUAgaGGUAGCAg -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 164489 | 0.66 | 0.93729 |
Target: 5'- cGCGcccaGCGUCaGCUGCGUgaaCUCUucuUCGUCg -3' miRNA: 3'- -CGC----CGCAGaCGGCGUA---GAGGu--AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 161844 | 0.72 | 0.63136 |
Target: 5'- aGCGGCGgg-GCCGaCAgCUCCGUCG-Cg -3' miRNA: 3'- -CGCCGCagaCGGC-GUaGAGGUAGCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 161649 | 0.66 | 0.922297 |
Target: 5'- cGCGGCGaUCU-UCGC--CUCgGUCGUCg -3' miRNA: 3'- -CGCCGC-AGAcGGCGuaGAGgUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 160993 | 0.67 | 0.886346 |
Target: 5'- gGCGGCGggcugCUGCUGCua-UCCGUgaucaUGUCc -3' miRNA: 3'- -CGCCGCa----GACGGCGuagAGGUA-----GCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 159973 | 0.68 | 0.850629 |
Target: 5'- cGCGGCGaUCgugGCCGU--CUCCAcCGUg -3' miRNA: 3'- -CGCCGC-AGa--CGGCGuaGAGGUaGCAg -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 157012 | 0.68 | 0.879604 |
Target: 5'- -gGGCGUCUcgcucgugGCgGCAUCgucgCCcUCGUCc -3' miRNA: 3'- cgCCGCAGA--------CGgCGUAGa---GGuAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 154171 | 0.68 | 0.872656 |
Target: 5'- gGCGGCGgCUGuuGCuggcUCgCCGUCGcCa -3' miRNA: 3'- -CGCCGCaGACggCGu---AGaGGUAGCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 153981 | 0.67 | 0.899199 |
Target: 5'- cGCGGuCGUCgugaucGuuGuCGUCUCUGUCGUg -3' miRNA: 3'- -CGCC-GCAGa-----CggC-GUAGAGGUAGCAg -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 152923 | 0.68 | 0.879604 |
Target: 5'- gGCGGCG-CUGCCGCcgCggcaaAUCGa- -3' miRNA: 3'- -CGCCGCaGACGGCGuaGagg--UAGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 151603 | 0.72 | 0.659988 |
Target: 5'- uGCGGCGUCauccuccgacacaUGCUGCAcg-UCGUCGUCu -3' miRNA: 3'- -CGCCGCAG-------------ACGGCGUagaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 150230 | 0.67 | 0.892879 |
Target: 5'- aGCGGCGUCgucaggaucaGCCGCucCUCCucgaggAUCGUg -3' miRNA: 3'- -CGCCGCAGa---------CGGCGuaGAGG------UAGCAg -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 149061 | 0.7 | 0.784262 |
Target: 5'- gGCGGCGgcagGCCG-AUCggggUCGUCGUCa -3' miRNA: 3'- -CGCCGCaga-CGGCgUAGa---GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 147138 | 0.68 | 0.858163 |
Target: 5'- uGCccCGUCUGCCGCAUCaCCGUgGcCa -3' miRNA: 3'- -CGccGCAGACGGCGUAGaGGUAgCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 146766 | 1.12 | 0.002497 |
Target: 5'- gGCGGCGUCUGCCGCAUCUCCAUCGUCg -3' miRNA: 3'- -CGCCGCAGACGGCGUAGAGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 145462 | 0.67 | 0.911188 |
Target: 5'- aUGGCGUCggggGCUGCcggUCCAUCuGUCc -3' miRNA: 3'- cGCCGCAGa---CGGCGuagAGGUAG-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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