miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 144989 0.7 0.793084
Target:  5'- uGCGGCGUCagauggugGaUCGCGUUguaCAUCGUCa -3'
miRNA:   3'- -CGCCGCAGa-------C-GGCGUAGag-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 141929 0.67 0.911188
Target:  5'- aGCGGUGUCUGUauCGCcgUUCgggGUUGUCu -3'
miRNA:   3'- -CGCCGCAGACG--GCGuaGAGg--UAGCAG- -5'
16148 5' -57 NC_004065.1 + 132492 0.67 0.911188
Target:  5'- cGCuGGCG-CUGaUCGCGUCguucgcgCgCAUCGUCg -3'
miRNA:   3'- -CG-CCGCaGAC-GGCGUAGa------G-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 131764 0.68 0.872656
Target:  5'- gGCGcGCGcCcaggGCCGcCGUCccgagCCGUCGUCg -3'
miRNA:   3'- -CGC-CGCaGa---CGGC-GUAGa----GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 130604 0.72 0.660973
Target:  5'- gGCGGCGUCUGCCGC-UCgggCCccugcugCGa- -3'
miRNA:   3'- -CGCCGCAGACGGCGuAGa--GGua-----GCag -5'
16148 5' -57 NC_004065.1 + 126597 0.73 0.601751
Target:  5'- -aGGUGUCgaucagGCCGCG-CUCCAUCG-Cg -3'
miRNA:   3'- cgCCGCAGa-----CGGCGUaGAGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 125466 0.66 0.932515
Target:  5'- cGCGGCGUgcacagcgGCCGCAccugcccguUCUCCGU-GUg -3'
miRNA:   3'- -CGCCGCAga------CGGCGU---------AGAGGUAgCAg -5'
16148 5' -57 NC_004065.1 + 121088 0.7 0.747781
Target:  5'- uCGGCGUaCUGCCGCAggcgcagCgcgCUuUCGUCg -3'
miRNA:   3'- cGCCGCA-GACGGCGUa------Ga--GGuAGCAG- -5'
16148 5' -57 NC_004065.1 + 120745 0.72 0.658017
Target:  5'- uCGGCGUgacccaggacacugCUGCCGCGagUCgUCAUCGUCa -3'
miRNA:   3'- cGCCGCA--------------GACGGCGU--AGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 120704 0.66 0.941844
Target:  5'- aGCGGC-UC-GcCCGCuuucagCUCCGUCGUa -3'
miRNA:   3'- -CGCCGcAGaC-GGCGua----GAGGUAGCAg -5'
16148 5' -57 NC_004065.1 + 120628 0.69 0.826942
Target:  5'- cGUGGCGUCcGCCGCGg--CCGacgggcUUGUCu -3'
miRNA:   3'- -CGCCGCAGaCGGCGUagaGGU------AGCAG- -5'
16148 5' -57 NC_004065.1 + 119544 0.69 0.826942
Target:  5'- gGCGGcCGUCUGCUGCAgCagCAUguaGUCg -3'
miRNA:   3'- -CGCC-GCAGACGGCGUaGagGUAg--CAG- -5'
16148 5' -57 NC_004065.1 + 118204 0.7 0.784262
Target:  5'- uUGGCGcggCUGaCGCA-UUCCGUCGUCg -3'
miRNA:   3'- cGCCGCa--GACgGCGUaGAGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 116259 0.67 0.916853
Target:  5'- uCGGuCGUCUGCCGCcgCggcugUCCcUCGg- -3'
miRNA:   3'- cGCC-GCAGACGGCGuaG-----AGGuAGCag -5'
16148 5' -57 NC_004065.1 + 110186 0.67 0.911188
Target:  5'- uGCGGCGgccgCgacgcGCCGCcgC-CCGUCGa- -3'
miRNA:   3'- -CGCCGCa---Ga----CGGCGuaGaGGUAGCag -5'
16148 5' -57 NC_004065.1 + 109881 0.73 0.621481
Target:  5'- cCGGCGUCgccgcgGCCGCGUCggggggucCCGgcUCGUCc -3'
miRNA:   3'- cGCCGCAGa-----CGGCGUAGa-------GGU--AGCAG- -5'
16148 5' -57 NC_004065.1 + 107461 0.75 0.486759
Target:  5'- -gGGCGUCUGCCGCAggaggaaggCUCCGaCGg- -3'
miRNA:   3'- cgCCGCAGACGGCGUa--------GAGGUaGCag -5'
16148 5' -57 NC_004065.1 + 104163 0.67 0.892879
Target:  5'- gGCGGUGUCggucGCCGCuUCggugCCGgauacgacCGUCa -3'
miRNA:   3'- -CGCCGCAGa---CGGCGuAGa---GGUa-------GCAG- -5'
16148 5' -57 NC_004065.1 + 101614 0.66 0.93729
Target:  5'- gGCGGCG-CcGCCGCcgCUgCCGcUCGg- -3'
miRNA:   3'- -CGCCGCaGaCGGCGuaGA-GGU-AGCag -5'
16148 5' -57 NC_004065.1 + 99972 0.74 0.552903
Target:  5'- cGCGGCGUgCUcggGCCGCGgg-UCGUCGUCu -3'
miRNA:   3'- -CGCCGCA-GA---CGGCGUagaGGUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.