miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 96768 0.66 0.941844
Target:  5'- aCGGCGgagGCgGCAUCgcggCCGUCuUCg -3'
miRNA:   3'- cGCCGCagaCGgCGUAGa---GGUAGcAG- -5'
16148 5' -57 NC_004065.1 + 94441 0.68 0.869107
Target:  5'- aGCGGCGcguguguUCgaaggaggugacgGCCGCcUCcCCGUCGUCc -3'
miRNA:   3'- -CGCCGC-------AGa------------CGGCGuAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 91705 0.67 0.916853
Target:  5'- cGCGGCcacgaUGuCCGCGagCUCCcgCGUCu -3'
miRNA:   3'- -CGCCGcag--AC-GGCGUa-GAGGuaGCAG- -5'
16148 5' -57 NC_004065.1 + 90999 0.66 0.93729
Target:  5'- aCGGCGugaguuucaccgUCUGCUGCGUgUCC-UCGa- -3'
miRNA:   3'- cGCCGC------------AGACGGCGUAgAGGuAGCag -5'
16148 5' -57 NC_004065.1 + 80973 0.68 0.850629
Target:  5'- uCGGC--CUGCCGCcg--CCGUCGUCg -3'
miRNA:   3'- cGCCGcaGACGGCGuagaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 78897 0.78 0.367426
Target:  5'- cGCGGCGUUgccGCCGCcuUCgcugcugCCGUCGUCg -3'
miRNA:   3'- -CGCCGCAGa--CGGCGu-AGa------GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 77109 0.67 0.905303
Target:  5'- cGCGGCGgcagcGCCGCcga--CAUCGUCa -3'
miRNA:   3'- -CGCCGCaga--CGGCGuagagGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 76751 0.68 0.842909
Target:  5'- cGCGGCGcCgGCgGCcUCgUCAUCGUCc -3'
miRNA:   3'- -CGCCGCaGaCGgCGuAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 75334 0.71 0.690389
Target:  5'- cGCGGCGUCcGUCGCGUUcgUCC-UCGa- -3'
miRNA:   3'- -CGCCGCAGaCGGCGUAG--AGGuAGCag -5'
16148 5' -57 NC_004065.1 + 67677 0.66 0.927517
Target:  5'- gGCGGCGgcgGCgGCGggccCUCCAUC-UCu -3'
miRNA:   3'- -CGCCGCagaCGgCGUa---GAGGUAGcAG- -5'
16148 5' -57 NC_004065.1 + 67611 0.69 0.826942
Target:  5'- cGCGGCGUCcGUCGCAccguacggcguUCgagaugCCGguggCGUCg -3'
miRNA:   3'- -CGCCGCAGaCGGCGU-----------AGa-----GGUa---GCAG- -5'
16148 5' -57 NC_004065.1 + 66613 0.72 0.64124
Target:  5'- cGCGGCG-UUGCCGaCGcUCUCggcgaCAUCGUCg -3'
miRNA:   3'- -CGCCGCaGACGGC-GU-AGAG-----GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 63877 0.66 0.932515
Target:  5'- uCGGCGccgCUGCCGCcggCgCCGaCGUCu -3'
miRNA:   3'- cGCCGCa--GACGGCGua-GaGGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 62874 0.69 0.80177
Target:  5'- uGUGGCgGUCUGCUgGCcUCccugcCCGUCGUCa -3'
miRNA:   3'- -CGCCG-CAGACGG-CGuAGa----GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 62674 0.68 0.879604
Target:  5'- aGCGGCGacccugUCUGCCGCcgCgUUgGUCG-Cg -3'
miRNA:   3'- -CGCCGC------AGACGGCGuaG-AGgUAGCaG- -5'
16148 5' -57 NC_004065.1 + 60893 0.68 0.858163
Target:  5'- cGCGaGCGUCUcgggaacugcugGCCGCGg--CCcgCGUCu -3'
miRNA:   3'- -CGC-CGCAGA------------CGGCGUagaGGuaGCAG- -5'
16148 5' -57 NC_004065.1 + 59906 0.7 0.773508
Target:  5'- aGCGGCGUCUGCuCGagaaagaCGUUGUCg -3'
miRNA:   3'- -CGCCGCAGACG-GCguagag-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 59594 0.67 0.910029
Target:  5'- gGCGGCGUCcuucgucgauccGCCGCAgcuacacuUCUugCCGUUGUUg -3'
miRNA:   3'- -CGCCGCAGa-----------CGGCGU--------AGA--GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 56636 0.67 0.911188
Target:  5'- uGCGGUGgcagCgGCCGCGgcaccCUUCAcCGUCg -3'
miRNA:   3'- -CGCCGCa---GaCGGCGUa----GAGGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 54568 0.69 0.826942
Target:  5'- cGCGGCGcggagaCUGCuguugucuCGCGcUCUCCGcUCGUCg -3'
miRNA:   3'- -CGCCGCa-----GACG--------GCGU-AGAGGU-AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.