miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 26052 0.68 0.865508
Target:  5'- cGCGGCGUCgaaCCGCGagccgauuuUCcCCGUCGa- -3'
miRNA:   3'- -CGCCGCAGac-GGCGU---------AGaGGUAGCag -5'
16148 5' -57 NC_004065.1 + 149061 0.7 0.784262
Target:  5'- gGCGGCGgcagGCCG-AUCggggUCGUCGUCa -3'
miRNA:   3'- -CGCCGCaga-CGGCgUAGa---GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 196978 0.7 0.784262
Target:  5'- gGCGGCGc---CCGCAUCcucguaUCCGUCGUUg -3'
miRNA:   3'- -CGCCGCagacGGCGUAG------AGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 144989 0.7 0.793084
Target:  5'- uGCGGCGUCagauggugGaUCGCGUUguaCAUCGUCa -3'
miRNA:   3'- -CGCCGCAGa-------C-GGCGUAGag-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 62874 0.69 0.80177
Target:  5'- uGUGGCgGUCUGCUgGCcUCccugcCCGUCGUCa -3'
miRNA:   3'- -CGCCG-CAGACGG-CGuAGa----GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 54568 0.69 0.826942
Target:  5'- cGCGGCGcggagaCUGCuguugucuCGCGcUCUCCGcUCGUCg -3'
miRNA:   3'- -CGCCGCa-----GACG--------GCGU-AGAGGU-AGCAG- -5'
16148 5' -57 NC_004065.1 + 120628 0.69 0.826942
Target:  5'- cGUGGCGUCcGCCGCGg--CCGacgggcUUGUCu -3'
miRNA:   3'- -CGCCGCAGaCGGCGUagaGGU------AGCAG- -5'
16148 5' -57 NC_004065.1 + 76751 0.68 0.842909
Target:  5'- cGCGGCGcCgGCgGCcUCgUCAUCGUCc -3'
miRNA:   3'- -CGCCGCaGaCGgCGuAGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 147138 0.68 0.858163
Target:  5'- uGCccCGUCUGCCGCAUCaCCGUgGcCa -3'
miRNA:   3'- -CGccGCAGACGGCGUAGaGGUAgCaG- -5'
16148 5' -57 NC_004065.1 + 118204 0.7 0.784262
Target:  5'- uUGGCGcggCUGaCGCA-UUCCGUCGUCg -3'
miRNA:   3'- cGCCGCa--GACgGCGUaGAGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 27287 0.7 0.775312
Target:  5'- gGCGGCG-CcGCCgacgacGCGUCUaUCGUCGUCg -3'
miRNA:   3'- -CGCCGCaGaCGG------CGUAGA-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 59906 0.7 0.773508
Target:  5'- aGCGGCGUCUGCuCGagaaagaCGUUGUCg -3'
miRNA:   3'- -CGCCGCAGACG-GCguagag-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 107461 0.75 0.486759
Target:  5'- -gGGCGUCUGCCGCAggaggaaggCUCCGaCGg- -3'
miRNA:   3'- cgCCGCAGACGGCGUa--------GAGGUaGCag -5'
16148 5' -57 NC_004065.1 + 99972 0.74 0.552903
Target:  5'- cGCGGCGUgCUcggGCCGCGgg-UCGUCGUCu -3'
miRNA:   3'- -CGCCGCA-GA---CGGCGUagaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 126597 0.73 0.601751
Target:  5'- -aGGUGUCgaucagGCCGCG-CUCCAUCG-Cg -3'
miRNA:   3'- cgCCGCAGa-----CGGCGUaGAGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 207520 0.73 0.621481
Target:  5'- aGCGGuCGUCgguccuccucGCCGCGcgCUCCGcgUCGUCg -3'
miRNA:   3'- -CGCC-GCAGa---------CGGCGUa-GAGGU--AGCAG- -5'
16148 5' -57 NC_004065.1 + 109881 0.73 0.621481
Target:  5'- cCGGCGUCgccgcgGCCGCGUCggggggucCCGgcUCGUCc -3'
miRNA:   3'- cGCCGCAGa-----CGGCGUAGa-------GGU--AGCAG- -5'
16148 5' -57 NC_004065.1 + 151603 0.72 0.659988
Target:  5'- uGCGGCGUCauccuccgacacaUGCUGCAcg-UCGUCGUCu -3'
miRNA:   3'- -CGCCGCAG-------------ACGGCGUagaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 75334 0.71 0.690389
Target:  5'- cGCGGCGUCcGUCGCGUUcgUCC-UCGa- -3'
miRNA:   3'- -CGCCGCAGaCGGCGUAG--AGGuAGCag -5'
16148 5' -57 NC_004065.1 + 195407 0.71 0.701085
Target:  5'- aCGGCGagccguacacguacgCUcccGCCGCGUCgCCGUCGUCg -3'
miRNA:   3'- cGCCGCa--------------GA---CGGCGUAGaGGUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.