Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16148 | 5' | -57 | NC_004065.1 | + | 26052 | 0.68 | 0.865508 |
Target: 5'- cGCGGCGUCgaaCCGCGagccgauuuUCcCCGUCGa- -3' miRNA: 3'- -CGCCGCAGac-GGCGU---------AGaGGUAGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 147138 | 0.68 | 0.858163 |
Target: 5'- uGCccCGUCUGCCGCAUCaCCGUgGcCa -3' miRNA: 3'- -CGccGCAGACGGCGUAGaGGUAgCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 195407 | 0.71 | 0.701085 |
Target: 5'- aCGGCGagccguacacguacgCUcccGCCGCGUCgCCGUCGUCg -3' miRNA: 3'- cGCCGCa--------------GA---CGGCGUAGaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 75334 | 0.71 | 0.690389 |
Target: 5'- cGCGGCGUCcGUCGCGUUcgUCC-UCGa- -3' miRNA: 3'- -CGCCGCAGaCGGCGUAG--AGGuAGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 151603 | 0.72 | 0.659988 |
Target: 5'- uGCGGCGUCauccuccgacacaUGCUGCAcg-UCGUCGUCu -3' miRNA: 3'- -CGCCGCAG-------------ACGGCGUagaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 109881 | 0.73 | 0.621481 |
Target: 5'- cCGGCGUCgccgcgGCCGCGUCggggggucCCGgcUCGUCc -3' miRNA: 3'- cGCCGCAGa-----CGGCGUAGa-------GGU--AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 207520 | 0.73 | 0.621481 |
Target: 5'- aGCGGuCGUCgguccuccucGCCGCGcgCUCCGcgUCGUCg -3' miRNA: 3'- -CGCC-GCAGa---------CGGCGUa-GAGGU--AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 126597 | 0.73 | 0.601751 |
Target: 5'- -aGGUGUCgaucagGCCGCG-CUCCAUCG-Cg -3' miRNA: 3'- cgCCGCAGa-----CGGCGUaGAGGUAGCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 99972 | 0.74 | 0.552903 |
Target: 5'- cGCGGCGUgCUcggGCCGCGgg-UCGUCGUCu -3' miRNA: 3'- -CGCCGCA-GA---CGGCGUagaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 107461 | 0.75 | 0.486759 |
Target: 5'- -gGGCGUCUGCCGCAggaggaaggCUCCGaCGg- -3' miRNA: 3'- cgCCGCAGACGGCGUa--------GAGGUaGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 59906 | 0.7 | 0.773508 |
Target: 5'- aGCGGCGUCUGCuCGagaaagaCGUUGUCg -3' miRNA: 3'- -CGCCGCAGACG-GCguagag-GUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 27287 | 0.7 | 0.775312 |
Target: 5'- gGCGGCG-CcGCCgacgacGCGUCUaUCGUCGUCg -3' miRNA: 3'- -CGCCGCaGaCGG------CGUAGA-GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 76751 | 0.68 | 0.842909 |
Target: 5'- cGCGGCGcCgGCgGCcUCgUCAUCGUCc -3' miRNA: 3'- -CGCCGCaGaCGgCGuAGaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 120628 | 0.69 | 0.826942 |
Target: 5'- cGUGGCGUCcGCCGCGg--CCGacgggcUUGUCu -3' miRNA: 3'- -CGCCGCAGaCGGCGUagaGGU------AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 54568 | 0.69 | 0.826942 |
Target: 5'- cGCGGCGcggagaCUGCuguugucuCGCGcUCUCCGcUCGUCg -3' miRNA: 3'- -CGCCGCa-----GACG--------GCGU-AGAGGU-AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 62874 | 0.69 | 0.80177 |
Target: 5'- uGUGGCgGUCUGCUgGCcUCccugcCCGUCGUCa -3' miRNA: 3'- -CGCCG-CAGACGG-CGuAGa----GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 144989 | 0.7 | 0.793084 |
Target: 5'- uGCGGCGUCagauggugGaUCGCGUUguaCAUCGUCa -3' miRNA: 3'- -CGCCGCAGa-------C-GGCGUAGag-GUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 196978 | 0.7 | 0.784262 |
Target: 5'- gGCGGCGc---CCGCAUCcucguaUCCGUCGUUg -3' miRNA: 3'- -CGCCGCagacGGCGUAG------AGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 149061 | 0.7 | 0.784262 |
Target: 5'- gGCGGCGgcagGCCG-AUCggggUCGUCGUCa -3' miRNA: 3'- -CGCCGCaga-CGGCgUAGa---GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 118204 | 0.7 | 0.784262 |
Target: 5'- uUGGCGcggCUGaCGCA-UUCCGUCGUCg -3' miRNA: 3'- cGCCGCa--GACgGCGUaGAGGUAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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