Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16148 | 5' | -57 | NC_004065.1 | + | 28481 | 0.78 | 0.359702 |
Target: 5'- uGUGGCGUCUggccgacagcGCCGCGgagCUCCGUCG-Ca -3' miRNA: 3'- -CGCCGCAGA----------CGGCGUa--GAGGUAGCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 67611 | 0.69 | 0.826942 |
Target: 5'- cGCGGCGUCcGUCGCAccguacggcguUCgagaugCCGguggCGUCg -3' miRNA: 3'- -CGCCGCAGaCGGCGU-----------AGa-----GGUa---GCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 159973 | 0.68 | 0.850629 |
Target: 5'- cGCGGCGaUCgugGCCGU--CUCCAcCGUg -3' miRNA: 3'- -CGCCGC-AGa--CGGCGuaGAGGUaGCAg -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 164489 | 0.66 | 0.93729 |
Target: 5'- cGCGcccaGCGUCaGCUGCGUgaaCUCUucuUCGUCg -3' miRNA: 3'- -CGC----CGCAGaCGGCGUA---GAGGu--AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 161844 | 0.72 | 0.63136 |
Target: 5'- aGCGGCGgg-GCCGaCAgCUCCGUCG-Cg -3' miRNA: 3'- -CGCCGCagaCGGC-GUaGAGGUAGCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 66613 | 0.72 | 0.64124 |
Target: 5'- cGCGGCG-UUGCCGaCGcUCUCggcgaCAUCGUCg -3' miRNA: 3'- -CGCCGCaGACGGC-GU-AGAG-----GUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 120745 | 0.72 | 0.658017 |
Target: 5'- uCGGCGUgacccaggacacugCUGCCGCGagUCgUCAUCGUCa -3' miRNA: 3'- cGCCGCA--------------GACGGCGU--AGaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 130604 | 0.72 | 0.660973 |
Target: 5'- gGCGGCGUCUGCCGC-UCgggCCccugcugCGa- -3' miRNA: 3'- -CGCCGCAGACGGCGuAGa--GGua-----GCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 186860 | 0.71 | 0.728941 |
Target: 5'- uCGGUGUCUGCCGU-UC-CCGcCGUCc -3' miRNA: 3'- cGCCGCAGACGGCGuAGaGGUaGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 119544 | 0.69 | 0.826942 |
Target: 5'- gGCGGcCGUCUGCUGCAgCagCAUguaGUCg -3' miRNA: 3'- -CGCC-GCAGACGGCGUaGagGUAg--CAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 191866 | 0.7 | 0.747781 |
Target: 5'- cGCGGa-UC-GCCGCGUCUuCCAgCGUCa -3' miRNA: 3'- -CGCCgcAGaCGGCGUAGA-GGUaGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 202876 | 0.71 | 0.689414 |
Target: 5'- cGCGGCGUgUGuuGCucggacccggcucGUCguugUCAUCGUCg -3' miRNA: 3'- -CGCCGCAgACggCG-------------UAGa---GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 78897 | 0.78 | 0.367426 |
Target: 5'- cGCGGCGUUgccGCCGCcuUCgcugcugCCGUCGUCg -3' miRNA: 3'- -CGCCGCAGa--CGGCGu-AGa------GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 178689 | 0.69 | 0.80177 |
Target: 5'- aGCuGCGUCUGCagCGCGUCaUCAUCGa- -3' miRNA: 3'- -CGcCGCAGACG--GCGUAGaGGUAGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 169475 | 0.77 | 0.416108 |
Target: 5'- cCGGCGUCU-CCGuCGUCUCCGgcggcuUCGUCg -3' miRNA: 3'- cGCCGCAGAcGGC-GUAGAGGU------AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 173493 | 0.72 | 0.67081 |
Target: 5'- uGCGGUGUC-GCCGCcacucugaagaaAUCUCgCGUcCGUCg -3' miRNA: 3'- -CGCCGCAGaCGGCG------------UAGAG-GUA-GCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 210870 | 0.69 | 0.826942 |
Target: 5'- aGCGGCaUCgGCaGCAUCgUCGUCGUCc -3' miRNA: 3'- -CGCCGcAGaCGgCGUAGaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 80973 | 0.68 | 0.850629 |
Target: 5'- uCGGC--CUGCCGCcg--CCGUCGUCg -3' miRNA: 3'- cGCCGcaGACGGCGuagaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 217312 | 0.74 | 0.533678 |
Target: 5'- cGUGGcCGUUUaucGCCGCAUCUCUugccgacguucGUCGUCg -3' miRNA: 3'- -CGCC-GCAGA---CGGCGUAGAGG-----------UAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 211954 | 0.72 | 0.651114 |
Target: 5'- uGCGGCGgucgCUGCCGC-----CAUCGUCg -3' miRNA: 3'- -CGCCGCa---GACGGCGuagagGUAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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