miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 171409 0.68 0.861124
Target:  5'- cCGGCGacUCcGCCGCGcgcgucgaucucgacUCcgCCGUCGUCg -3'
miRNA:   3'- cGCCGC--AGaCGGCGU---------------AGa-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 159973 0.68 0.850629
Target:  5'- cGCGGCGaUCgugGCCGU--CUCCAcCGUg -3'
miRNA:   3'- -CGCCGC-AGa--CGGCGuaGAGGUaGCAg -5'
16148 5' -57 NC_004065.1 + 202876 0.71 0.689414
Target:  5'- cGCGGCGUgUGuuGCucggacccggcucGUCguugUCAUCGUCg -3'
miRNA:   3'- -CGCCGCAgACggCG-------------UAGa---GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 217312 0.74 0.533678
Target:  5'- cGUGGcCGUUUaucGCCGCAUCUCUugccgacguucGUCGUCg -3'
miRNA:   3'- -CGCC-GCAGA---CGGCGUAGAGG-----------UAGCAG- -5'
16148 5' -57 NC_004065.1 + 59594 0.67 0.910029
Target:  5'- gGCGGCGUCcuucgucgauccGCCGCAgcuacacuUCUugCCGUUGUUg -3'
miRNA:   3'- -CGCCGCAGa-----------CGGCGU--------AGA--GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 157012 0.68 0.879604
Target:  5'- -gGGCGUCUcgcucgugGCgGCAUCgucgCCcUCGUCc -3'
miRNA:   3'- cgCCGCAGA--------CGgCGUAGa---GGuAGCAG- -5'
16148 5' -57 NC_004065.1 + 67611 0.69 0.826942
Target:  5'- cGCGGCGUCcGUCGCAccguacggcguUCgagaugCCGguggCGUCg -3'
miRNA:   3'- -CGCCGCAGaCGGCGU-----------AGa-----GGUa---GCAG- -5'
16148 5' -57 NC_004065.1 + 169475 0.77 0.416108
Target:  5'- cCGGCGUCU-CCGuCGUCUCCGgcggcuUCGUCg -3'
miRNA:   3'- cGCCGCAGAcGGC-GUAGAGGU------AGCAG- -5'
16148 5' -57 NC_004065.1 + 131764 0.68 0.872656
Target:  5'- gGCGcGCGcCcaggGCCGcCGUCccgagCCGUCGUCg -3'
miRNA:   3'- -CGC-CGCaGa---CGGC-GUAGa----GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 78897 0.78 0.367426
Target:  5'- cGCGGCGUUgccGCCGCcuUCgcugcugCCGUCGUCg -3'
miRNA:   3'- -CGCCGCAGa--CGGCGu-AGa------GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 80973 0.68 0.850629
Target:  5'- uCGGC--CUGCCGCcg--CCGUCGUCg -3'
miRNA:   3'- cGCCGcaGACGGCGuagaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 32893 0.68 0.865508
Target:  5'- gGCGaGCGUCUGCCGCugggcAUCccCCAcaacugguUCGUg -3'
miRNA:   3'- -CGC-CGCAGACGGCG-----UAGa-GGU--------AGCAg -5'
16148 5' -57 NC_004065.1 + 178689 0.69 0.80177
Target:  5'- aGCuGCGUCUGCagCGCGUCaUCAUCGa- -3'
miRNA:   3'- -CGcCGCAGACG--GCGUAGaGGUAGCag -5'
16148 5' -57 NC_004065.1 + 186860 0.71 0.728941
Target:  5'- uCGGUGUCUGCCGU-UC-CCGcCGUCc -3'
miRNA:   3'- cGCCGCAGACGGCGuAGaGGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 120745 0.72 0.658017
Target:  5'- uCGGCGUgacccaggacacugCUGCCGCGagUCgUCAUCGUCa -3'
miRNA:   3'- cGCCGCA--------------GACGGCGU--AGaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 161844 0.72 0.63136
Target:  5'- aGCGGCGgg-GCCGaCAgCUCCGUCG-Cg -3'
miRNA:   3'- -CGCCGCagaCGGC-GUaGAGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 132492 0.67 0.911188
Target:  5'- cGCuGGCG-CUGaUCGCGUCguucgcgCgCAUCGUCg -3'
miRNA:   3'- -CG-CCGCaGAC-GGCGUAGa------G-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 3799 0.67 0.911188
Target:  5'- cUGGCGUgUGCCGUGUUcaacucgucuUCCGagGUCu -3'
miRNA:   3'- cGCCGCAgACGGCGUAG----------AGGUagCAG- -5'
16148 5' -57 NC_004065.1 + 184397 0.67 0.899199
Target:  5'- aCGGUGUCgcggacGCCGUGUCUCgAccguuccccUCGUCc -3'
miRNA:   3'- cGCCGCAGa-----CGGCGUAGAGgU---------AGCAG- -5'
16148 5' -57 NC_004065.1 + 160993 0.67 0.886346
Target:  5'- gGCGGCGggcugCUGCUGCua-UCCGUgaucaUGUCc -3'
miRNA:   3'- -CGCCGCa----GACGGCGuagAGGUA-----GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.