Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16148 | 5' | -57 | NC_004065.1 | + | 178689 | 0.69 | 0.80177 |
Target: 5'- aGCuGCGUCUGCagCGCGUCaUCAUCGa- -3' miRNA: 3'- -CGcCGCAGACG--GCGUAGaGGUAGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 200320 | 0.67 | 0.886346 |
Target: 5'- gGCGGCGUCcGCCGC-UCgaCCggCGa- -3' miRNA: 3'- -CGCCGCAGaCGGCGuAGa-GGuaGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 164489 | 0.66 | 0.93729 |
Target: 5'- cGCGcccaGCGUCaGCUGCGUgaaCUCUucuUCGUCg -3' miRNA: 3'- -CGC----CGCAGaCGGCGUA---GAGGu--AGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 157012 | 0.68 | 0.879604 |
Target: 5'- -gGGCGUCUcgcucgugGCgGCAUCgucgCCcUCGUCc -3' miRNA: 3'- cgCCGCAGA--------CGgCGUAGa---GGuAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 161649 | 0.66 | 0.922297 |
Target: 5'- cGCGGCGaUCU-UCGC--CUCgGUCGUCg -3' miRNA: 3'- -CGCCGC-AGAcGGCGuaGAGgUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 132492 | 0.67 | 0.911188 |
Target: 5'- cGCuGGCG-CUGaUCGCGUCguucgcgCgCAUCGUCg -3' miRNA: 3'- -CG-CCGCaGAC-GGCGUAGa------G-GUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 222694 | 0.67 | 0.898576 |
Target: 5'- aCGGC-UCcGCCGCGUCcgguaccaccggcUCgAUCGUCa -3' miRNA: 3'- cGCCGcAGaCGGCGUAG-------------AGgUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 151603 | 0.72 | 0.659988 |
Target: 5'- uGCGGCGUCauccuccgacacaUGCUGCAcg-UCGUCGUCu -3' miRNA: 3'- -CGCCGCAG-------------ACGGCGUagaGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 207626 | 0.65 | 0.944901 |
Target: 5'- aCGGUGaccagggacagcUCcaUGCCGCAcgcggccggcucccUCUCUGUCGUCg -3' miRNA: 3'- cGCCGC------------AG--ACGGCGU--------------AGAGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 120704 | 0.66 | 0.941844 |
Target: 5'- aGCGGC-UC-GcCCGCuuucagCUCCGUCGUa -3' miRNA: 3'- -CGCCGcAGaC-GGCGua----GAGGUAGCAg -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 150230 | 0.67 | 0.892879 |
Target: 5'- aGCGGCGUCgucaggaucaGCCGCucCUCCucgaggAUCGUg -3' miRNA: 3'- -CGCCGCAGa---------CGGCGuaGAGG------UAGCAg -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 22920 | 0.67 | 0.892879 |
Target: 5'- gGCGGCgGUCgGCgGUuccGUCUC-GUCGUCa -3' miRNA: 3'- -CGCCG-CAGaCGgCG---UAGAGgUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 17678 | 0.67 | 0.892879 |
Target: 5'- aCGGuCGUCcGUCGCGccaUCgccguggCCGUCGUCg -3' miRNA: 3'- cGCC-GCAGaCGGCGU---AGa------GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 152923 | 0.68 | 0.879604 |
Target: 5'- gGCGGCG-CUGCCGCcgCggcaaAUCGa- -3' miRNA: 3'- -CGCCGCaGACGGCGuaGagg--UAGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 62674 | 0.68 | 0.879604 |
Target: 5'- aGCGGCGacccugUCUGCCGCcgCgUUgGUCG-Cg -3' miRNA: 3'- -CGCCGC------AGACGGCGuaG-AGgUAGCaG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 30898 | 0.68 | 0.872656 |
Target: 5'- -gGGCGUCgggGUCGCAcucgUgUCCGUCGa- -3' miRNA: 3'- cgCCGCAGa--CGGCGU----AgAGGUAGCag -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 144989 | 0.7 | 0.793084 |
Target: 5'- uGCGGCGUCagauggugGaUCGCGUUguaCAUCGUCa -3' miRNA: 3'- -CGCCGCAGa-------C-GGCGUAGag-GUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 196978 | 0.7 | 0.784262 |
Target: 5'- gGCGGCGc---CCGCAUCcucguaUCCGUCGUUg -3' miRNA: 3'- -CGCCGCagacGGCGUAG------AGGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 149061 | 0.7 | 0.784262 |
Target: 5'- gGCGGCGgcagGCCG-AUCggggUCGUCGUCa -3' miRNA: 3'- -CGCCGCaga-CGGCgUAGa---GGUAGCAG- -5' |
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16148 | 5' | -57 | NC_004065.1 | + | 118204 | 0.7 | 0.784262 |
Target: 5'- uUGGCGcggCUGaCGCA-UUCCGUCGUCg -3' miRNA: 3'- cGCCGCa--GACgGCGUaGAGGUAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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