miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 59906 0.7 0.773508
Target:  5'- aGCGGCGUCUGCuCGagaaagaCGUUGUCg -3'
miRNA:   3'- -CGCCGCAGACG-GCguagag-GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 151603 0.72 0.659988
Target:  5'- uGCGGCGUCauccuccgacacaUGCUGCAcg-UCGUCGUCu -3'
miRNA:   3'- -CGCCGCAG-------------ACGGCGUagaGGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 109881 0.73 0.621481
Target:  5'- cCGGCGUCgccgcgGCCGCGUCggggggucCCGgcUCGUCc -3'
miRNA:   3'- cGCCGCAGa-----CGGCGUAGa-------GGU--AGCAG- -5'
16148 5' -57 NC_004065.1 + 207520 0.73 0.621481
Target:  5'- aGCGGuCGUCgguccuccucGCCGCGcgCUCCGcgUCGUCg -3'
miRNA:   3'- -CGCC-GCAGa---------CGGCGUa-GAGGU--AGCAG- -5'
16148 5' -57 NC_004065.1 + 62674 0.68 0.879604
Target:  5'- aGCGGCGacccugUCUGCCGCcgCgUUgGUCG-Cg -3'
miRNA:   3'- -CGCCGC------AGACGGCGuaG-AGgUAGCaG- -5'
16148 5' -57 NC_004065.1 + 152923 0.68 0.879604
Target:  5'- gGCGGCG-CUGCCGCcgCggcaaAUCGa- -3'
miRNA:   3'- -CGCCGCaGACGGCGuaGagg--UAGCag -5'
16148 5' -57 NC_004065.1 + 96768 0.66 0.941844
Target:  5'- aCGGCGgagGCgGCAUCgcggCCGUCuUCg -3'
miRNA:   3'- cGCCGCagaCGgCGUAGa---GGUAGcAG- -5'
16148 5' -57 NC_004065.1 + 35934 0.66 0.941844
Target:  5'- uCGGUGcUCUGUCGCGg--CCgcagGUCGUCg -3'
miRNA:   3'- cGCCGC-AGACGGCGUagaGG----UAGCAG- -5'
16148 5' -57 NC_004065.1 + 21731 0.66 0.941844
Target:  5'- -aGGUuucgCUGCCGCuAUCUUgguaCGUCGUCa -3'
miRNA:   3'- cgCCGca--GACGGCG-UAGAG----GUAGCAG- -5'
16148 5' -57 NC_004065.1 + 90999 0.66 0.93729
Target:  5'- aCGGCGugaguuucaccgUCUGCUGCGUgUCC-UCGa- -3'
miRNA:   3'- cGCCGC------------AGACGGCGUAgAGGuAGCag -5'
16148 5' -57 NC_004065.1 + 125466 0.66 0.932515
Target:  5'- cGCGGCGUgcacagcgGCCGCAccugcccguUCUCCGU-GUg -3'
miRNA:   3'- -CGCCGCAga------CGGCGU---------AGAGGUAgCAg -5'
16148 5' -57 NC_004065.1 + 229454 0.66 0.927517
Target:  5'- gGUGGCG-CUGCCGCcagCcCCGUUG-Cg -3'
miRNA:   3'- -CGCCGCaGACGGCGua-GaGGUAGCaG- -5'
16148 5' -57 NC_004065.1 + 191578 0.66 0.927517
Target:  5'- uGCGGUGaUCgGCgCGCGaaaaCCGUCGUCg -3'
miRNA:   3'- -CGCCGC-AGaCG-GCGUaga-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 67677 0.66 0.927517
Target:  5'- gGCGGCGgcgGCgGCGggccCUCCAUC-UCu -3'
miRNA:   3'- -CGCCGCagaCGgCGUa---GAGGUAGcAG- -5'
16148 5' -57 NC_004065.1 + 54461 0.66 0.924412
Target:  5'- cGCGcGCgGUCUGCCGCGagCgcacgcgcagccaccUCCGUCGa- -3'
miRNA:   3'- -CGC-CG-CAGACGGCGUa-G---------------AGGUAGCag -5'
16148 5' -57 NC_004065.1 + 91705 0.67 0.916853
Target:  5'- cGCGGCcacgaUGuCCGCGagCUCCcgCGUCu -3'
miRNA:   3'- -CGCCGcag--AC-GGCGUa-GAGGuaGCAG- -5'
16148 5' -57 NC_004065.1 + 22920 0.67 0.892879
Target:  5'- gGCGGCgGUCgGCgGUuccGUCUC-GUCGUCa -3'
miRNA:   3'- -CGCCG-CAGaCGgCG---UAGAGgUAGCAG- -5'
16148 5' -57 NC_004065.1 + 150230 0.67 0.892879
Target:  5'- aGCGGCGUCgucaggaucaGCCGCucCUCCucgaggAUCGUg -3'
miRNA:   3'- -CGCCGCAGa---------CGGCGuaGAGG------UAGCAg -5'
16148 5' -57 NC_004065.1 + 104163 0.67 0.892879
Target:  5'- gGCGGUGUCggucGCCGCuUCggugCCGgauacgacCGUCa -3'
miRNA:   3'- -CGCCGCAGa---CGGCGuAGa---GGUa-------GCAG- -5'
16148 5' -57 NC_004065.1 + 17678 0.67 0.892879
Target:  5'- aCGGuCGUCcGUCGCGccaUCgccguggCCGUCGUCg -3'
miRNA:   3'- cGCC-GCAGaCGGCGU---AGa------GGUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.