miRNA display CGI


Results 81 - 95 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 5' -57 NC_004065.1 + 35934 0.66 0.941844
Target:  5'- uCGGUGcUCUGUCGCGg--CCgcagGUCGUCg -3'
miRNA:   3'- cGCCGC-AGACGGCGUagaGG----UAGCAG- -5'
16148 5' -57 NC_004065.1 + 96768 0.66 0.941844
Target:  5'- aCGGCGgagGCgGCAUCgcggCCGUCuUCg -3'
miRNA:   3'- cGCCGCagaCGgCGUAGa---GGUAGcAG- -5'
16148 5' -57 NC_004065.1 + 91705 0.67 0.916853
Target:  5'- cGCGGCcacgaUGuCCGCGagCUCCcgCGUCu -3'
miRNA:   3'- -CGCCGcag--AC-GGCGUa-GAGGuaGCAG- -5'
16148 5' -57 NC_004065.1 + 145462 0.67 0.911188
Target:  5'- aUGGCGUCggggGCUGCcggUCCAUCuGUCc -3'
miRNA:   3'- cGCCGCAGa---CGGCGuagAGGUAG-CAG- -5'
16148 5' -57 NC_004065.1 + 110186 0.67 0.911188
Target:  5'- uGCGGCGgccgCgacgcGCCGCcgC-CCGUCGa- -3'
miRNA:   3'- -CGCCGCa---Ga----CGGCGuaGaGGUAGCag -5'
16148 5' -57 NC_004065.1 + 152923 0.68 0.879604
Target:  5'- gGCGGCG-CUGCCGCcgCggcaaAUCGa- -3'
miRNA:   3'- -CGCCGCaGACGGCGuaGagg--UAGCag -5'
16148 5' -57 NC_004065.1 + 17678 0.67 0.892879
Target:  5'- aCGGuCGUCcGUCGCGccaUCgccguggCCGUCGUCg -3'
miRNA:   3'- cGCC-GCAGaCGGCGU---AGa------GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 104163 0.67 0.892879
Target:  5'- gGCGGUGUCggucGCCGCuUCggugCCGgauacgacCGUCa -3'
miRNA:   3'- -CGCCGCAGa---CGGCGuAGa---GGUa-------GCAG- -5'
16148 5' -57 NC_004065.1 + 150230 0.67 0.892879
Target:  5'- aGCGGCGUCgucaggaucaGCCGCucCUCCucgaggAUCGUg -3'
miRNA:   3'- -CGCCGCAGa---------CGGCGuaGAGG------UAGCAg -5'
16148 5' -57 NC_004065.1 + 22920 0.67 0.892879
Target:  5'- gGCGGCgGUCgGCgGUuccGUCUC-GUCGUCa -3'
miRNA:   3'- -CGCCG-CAGaCGgCG---UAGAGgUAGCAG- -5'
16148 5' -57 NC_004065.1 + 222694 0.67 0.898576
Target:  5'- aCGGC-UCcGCCGCGUCcgguaccaccggcUCgAUCGUCa -3'
miRNA:   3'- cGCCGcAGaCGGCGUAG-------------AGgUAGCAG- -5'
16148 5' -57 NC_004065.1 + 153981 0.67 0.899199
Target:  5'- cGCGGuCGUCgugaucGuuGuCGUCUCUGUCGUg -3'
miRNA:   3'- -CGCC-GCAGa-----CggC-GUAGAGGUAGCAg -5'
16148 5' -57 NC_004065.1 + 12402 0.67 0.905303
Target:  5'- aGCcGCGaUCgUGCuCGUAUCUgCUAUCGUCg -3'
miRNA:   3'- -CGcCGC-AG-ACG-GCGUAGA-GGUAGCAG- -5'
16148 5' -57 NC_004065.1 + 56636 0.67 0.911188
Target:  5'- uGCGGUGgcagCgGCCGCGgcaccCUUCAcCGUCg -3'
miRNA:   3'- -CGCCGCa---GaCGGCGUa----GAGGUaGCAG- -5'
16148 5' -57 NC_004065.1 + 120704 0.66 0.941844
Target:  5'- aGCGGC-UC-GcCCGCuuucagCUCCGUCGUa -3'
miRNA:   3'- -CGCCGcAGaC-GGCGua----GAGGUAGCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.