miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16149 3' -53.8 NC_004065.1 + 198944 0.66 0.979683
Target:  5'- -uGAUCG-CCGCc-CGUGGCCAC-CAg -3'
miRNA:   3'- uuCUAGUaGGCGaaGUACCGGUGcGU- -5'
16149 3' -53.8 NC_004065.1 + 76496 0.66 0.979683
Target:  5'- uAGGGUUGucUCCGaaaUCgAUGGCCACGCu -3'
miRNA:   3'- -UUCUAGU--AGGCga-AG-UACCGGUGCGu -5'
16149 3' -53.8 NC_004065.1 + 96564 0.66 0.979009
Target:  5'- uGGAcUCGUCCGCcgacgagccgcgacgCGUGGCgACGCu -3'
miRNA:   3'- uUCU-AGUAGGCGaa-------------GUACCGgUGCGu -5'
16149 3' -53.8 NC_004065.1 + 97372 0.66 0.977373
Target:  5'- cAGAUCucguUCUGacagCgGUGGCCGCGCAg -3'
miRNA:   3'- uUCUAGu---AGGCgaa-G-UACCGGUGCGU- -5'
16149 3' -53.8 NC_004065.1 + 115990 0.66 0.974876
Target:  5'- aGAGGcgcUCGUCCGCcgaCGUGcGCCGCGgGg -3'
miRNA:   3'- -UUCU---AGUAGGCGaa-GUAC-CGGUGCgU- -5'
16149 3' -53.8 NC_004065.1 + 110940 0.66 0.974876
Target:  5'- cGGGU--UCCGCguggUCAU-GCCGCGCAc -3'
miRNA:   3'- uUCUAguAGGCGa---AGUAcCGGUGCGU- -5'
16149 3' -53.8 NC_004065.1 + 141350 0.67 0.962869
Target:  5'- cGGAcgUCGUCCGCUcgCGggugcUGGCgGCGCu -3'
miRNA:   3'- uUCU--AGUAGGCGAa-GU-----ACCGgUGCGu -5'
16149 3' -53.8 NC_004065.1 + 66977 0.67 0.961831
Target:  5'- gAAGAUCGUCCGCgcaagccgugaccagUCGgcgcccguguacgGGCCccGCGCGg -3'
miRNA:   3'- -UUCUAGUAGGCGa--------------AGUa------------CCGG--UGCGU- -5'
16149 3' -53.8 NC_004065.1 + 147500 0.67 0.959332
Target:  5'- gGGGAacgUCAUCCGCaugUUCggGGCCAC-CGa -3'
miRNA:   3'- -UUCU---AGUAGGCG---AAGuaCCGGUGcGU- -5'
16149 3' -53.8 NC_004065.1 + 57677 0.67 0.955569
Target:  5'- aGAGAUgAUCCaCUgUCAggugagGGCCGCGCu -3'
miRNA:   3'- -UUCUAgUAGGcGA-AGUa-----CCGGUGCGu -5'
16149 3' -53.8 NC_004065.1 + 136792 0.67 0.955569
Target:  5'- -cGAUCccaccggCCGCUUCGUcGGCUGCGUc -3'
miRNA:   3'- uuCUAGua-----GGCGAAGUA-CCGGUGCGu -5'
16149 3' -53.8 NC_004065.1 + 75663 0.67 0.95518
Target:  5'- gGAGGUCGgcgaggcggCCGCgggcugaUUCuUGGCCGCGCc -3'
miRNA:   3'- -UUCUAGUa--------GGCG-------AAGuACCGGUGCGu -5'
16149 3' -53.8 NC_004065.1 + 82354 0.67 0.954395
Target:  5'- -cGAUCGcgucgucagugaccUCCuGCUUgAUGGCgACGCAg -3'
miRNA:   3'- uuCUAGU--------------AGG-CGAAgUACCGgUGCGU- -5'
16149 3' -53.8 NC_004065.1 + 162915 0.68 0.942889
Target:  5'- aAAGAccuUCGUUCGgacCAUGGCCGCGCc -3'
miRNA:   3'- -UUCU---AGUAGGCgaaGUACCGGUGCGu -5'
16149 3' -53.8 NC_004065.1 + 81182 0.68 0.942889
Target:  5'- -cGAUCGcggcggCCGCcUCGUGGCCGaGCGa -3'
miRNA:   3'- uuCUAGUa-----GGCGaAGUACCGGUgCGU- -5'
16149 3' -53.8 NC_004065.1 + 166527 0.68 0.942889
Target:  5'- cGAGGcCAUCCGCacc-UGGCUGCGCGa -3'
miRNA:   3'- -UUCUaGUAGGCGaaguACCGGUGCGU- -5'
16149 3' -53.8 NC_004065.1 + 134881 0.68 0.928061
Target:  5'- cGAGGUCGUCCGCUagGUGGUgGuCGa- -3'
miRNA:   3'- -UUCUAGUAGGCGAagUACCGgU-GCgu -5'
16149 3' -53.8 NC_004065.1 + 135338 0.68 0.922634
Target:  5'- cAAGGUCAggggCCGCgagaUCAaGGCCagACGCGg -3'
miRNA:   3'- -UUCUAGUa---GGCGa---AGUaCCGG--UGCGU- -5'
16149 3' -53.8 NC_004065.1 + 188951 0.69 0.911054
Target:  5'- cAAGAUUAcgacaagcucuUCgGCUUCGUcGCCGCGCGg -3'
miRNA:   3'- -UUCUAGU-----------AGgCGAAGUAcCGGUGCGU- -5'
16149 3' -53.8 NC_004065.1 + 150241 0.69 0.911054
Target:  5'- cAGGAUCAgCCGCUccuccucgaggaUCGUGGgcuCCGCGUAg -3'
miRNA:   3'- -UUCUAGUaGGCGA------------AGUACC---GGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.