miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16149 5' -59.4 NC_004065.1 + 114878 0.66 0.882102
Target:  5'- uGCCgC-CGGCC-GGcGGUucCGAGGCCa -3'
miRNA:   3'- -CGGaGaGCCGGuCCuCCGu-GCUCUGG- -5'
16149 5' -59.4 NC_004065.1 + 118760 0.66 0.882102
Target:  5'- uUCUCUCGGUCAcGGcgccgacgAGGCA-GAGGCg -3'
miRNA:   3'- cGGAGAGCCGGU-CC--------UCCGUgCUCUGg -5'
16149 5' -59.4 NC_004065.1 + 182714 0.66 0.882102
Target:  5'- cGCCgcggaUCGGCCucacGGGCGacgcCGGGGCCa -3'
miRNA:   3'- -CGGag---AGCCGGucc-UCCGU----GCUCUGG- -5'
16149 5' -59.4 NC_004065.1 + 23193 0.66 0.881438
Target:  5'- cGCCUUUCGGCUGGuGuaucugaccgugcAGGCGCacGGACUc -3'
miRNA:   3'- -CGGAGAGCCGGUC-C-------------UCCGUGc-UCUGG- -5'
16149 5' -59.4 NC_004065.1 + 90508 0.66 0.880773
Target:  5'- uGCCgcagaaguaGGCCAGGuGGUGCGGGGa- -3'
miRNA:   3'- -CGGagag-----CCGGUCCuCCGUGCUCUgg -5'
16149 5' -59.4 NC_004065.1 + 129890 0.66 0.875378
Target:  5'- -gCUCaUCGGCU-GGAGGCGCu-GAUCg -3'
miRNA:   3'- cgGAG-AGCCGGuCCUCCGUGcuCUGG- -5'
16149 5' -59.4 NC_004065.1 + 64703 0.66 0.875378
Target:  5'- aGCagCUCGGCUcGGAGuacaCGCGAGACg -3'
miRNA:   3'- -CGgaGAGCCGGuCCUCc---GUGCUCUGg -5'
16149 5' -59.4 NC_004065.1 + 183966 0.66 0.875378
Target:  5'- aGCCUgugUUUGacgcggaccGCCAGGAGGgccucuagcaugUACGGGGCCa -3'
miRNA:   3'- -CGGA---GAGC---------CGGUCCUCC------------GUGCUCUGG- -5'
16149 5' -59.4 NC_004065.1 + 201080 0.66 0.875378
Target:  5'- cGCCUC-CGGCgAcGGAGGCG-GcGGCUu -3'
miRNA:   3'- -CGGAGaGCCGgU-CCUCCGUgCuCUGG- -5'
16149 5' -59.4 NC_004065.1 + 88497 0.66 0.87125
Target:  5'- cCCUCUCGGCCAGacuGCGCaucuugcgauacauGGACCu -3'
miRNA:   3'- cGGAGAGCCGGUCcucCGUGc-------------UCUGG- -5'
16149 5' -59.4 NC_004065.1 + 147875 0.66 0.86846
Target:  5'- uGCCUC---GCCAGGAGGUAC-AGcguCCg -3'
miRNA:   3'- -CGGAGagcCGGUCCUCCGUGcUCu--GG- -5'
16149 5' -59.4 NC_004065.1 + 201295 0.66 0.86846
Target:  5'- cCCUCcggCGGCCGGGGGaGgAgGAGAg- -3'
miRNA:   3'- cGGAGa--GCCGGUCCUC-CgUgCUCUgg -5'
16149 5' -59.4 NC_004065.1 + 46443 0.66 0.86846
Target:  5'- cCCUgUucaCGaGCCAGGAGGC-CGuGACg -3'
miRNA:   3'- cGGAgA---GC-CGGUCCUCCGuGCuCUGg -5'
16149 5' -59.4 NC_004065.1 + 164815 0.66 0.867757
Target:  5'- cGCCggcaCUCuGGCCguuuccgAGGAGGaaacCGCGAuGGCCg -3'
miRNA:   3'- -CGGa---GAG-CCGG-------UCCUCC----GUGCU-CUGG- -5'
16149 5' -59.4 NC_004065.1 + 35526 0.66 0.867053
Target:  5'- cGCCgaggacaUCUCGGUCuucuucaagagAGGAGGCGUGAGcggcggcGCCg -3'
miRNA:   3'- -CGG-------AGAGCCGG-----------UCCUCCGUGCUC-------UGG- -5'
16149 5' -59.4 NC_004065.1 + 217554 0.66 0.864218
Target:  5'- -aCUCgUCGGuacguuggguacgacCCAGGuuagAGGUACGAGAUCg -3'
miRNA:   3'- cgGAG-AGCC---------------GGUCC----UCCGUGCUCUGG- -5'
16149 5' -59.4 NC_004065.1 + 85628 0.66 0.861352
Target:  5'- aCCUCacuuguacaGGCaAGGAGGCACcAGAUCg -3'
miRNA:   3'- cGGAGag-------CCGgUCCUCCGUGcUCUGG- -5'
16149 5' -59.4 NC_004065.1 + 183156 0.66 0.861352
Target:  5'- cGCCgUCaCGGCCAGGAucuGGUugGucaGGuACCu -3'
miRNA:   3'- -CGG-AGaGCCGGUCCU---CCGugC---UC-UGG- -5'
16149 5' -59.4 NC_004065.1 + 29812 0.66 0.861352
Target:  5'- cGCUgCUCGGCCAGGucguccGGagauucCGAGGCg -3'
miRNA:   3'- -CGGaGAGCCGGUCCu-----CCgu----GCUCUGg -5'
16149 5' -59.4 NC_004065.1 + 163275 0.66 0.85406
Target:  5'- cGUCUCuUCGgucgcgacgccGCCGGGGuccgacGGCACGGGcGCCa -3'
miRNA:   3'- -CGGAG-AGC-----------CGGUCCU------CCGUGCUC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.