miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1615 5' -60.9 NC_001347.2 + 28165 0.66 0.804418
Target:  5'- aCCGUGGCgCGugacGGCCCcCUACCUgcgcGAUa -3'
miRNA:   3'- gGGCACCG-GU----UCGGGaGGUGGGa---CUG- -5'
1615 5' -60.9 NC_001347.2 + 55073 0.66 0.804418
Target:  5'- gCCCGccUGGCUGAccGCCCaacgacccCCGCCCauUGACg -3'
miRNA:   3'- -GGGC--ACCGGUU--CGGGa-------GGUGGG--ACUG- -5'
1615 5' -60.9 NC_001347.2 + 38454 0.66 0.795984
Target:  5'- cCCCGUcGCCGgccccgccgcgcAGCCCagCCACCgCgcgGGCa -3'
miRNA:   3'- -GGGCAcCGGU------------UCGGGa-GGUGG-Ga--CUG- -5'
1615 5' -60.9 NC_001347.2 + 151327 0.66 0.793428
Target:  5'- uUCGUGGCCugacgccgcAGGCUCUgguggcgcgugggcCCAgCCUGGCg -3'
miRNA:   3'- gGGCACCGG---------UUCGGGA--------------GGUgGGACUG- -5'
1615 5' -60.9 NC_001347.2 + 120302 0.66 0.787418
Target:  5'- gCCGUGGaCCuggccaaacGAGCCCUCUggACgCCgGACc -3'
miRNA:   3'- gGGCACC-GG---------UUCGGGAGG--UG-GGaCUG- -5'
1615 5' -60.9 NC_001347.2 + 102311 0.66 0.787418
Target:  5'- aCCCGgugcuGCaCGAGCCCg-CGCCCUGuCu -3'
miRNA:   3'- -GGGCac---CG-GUUCGGGagGUGGGACuG- -5'
1615 5' -60.9 NC_001347.2 + 96921 0.66 0.787418
Target:  5'- gCCCG-GGCCGccGCCagcgUCCGCgCCUGcACg -3'
miRNA:   3'- -GGGCaCCGGUu-CGGg---AGGUG-GGAC-UG- -5'
1615 5' -60.9 NC_001347.2 + 196551 0.66 0.778729
Target:  5'- cCCCGcgGGCUggGCCUgugCCaACCCgcgucgcGGCu -3'
miRNA:   3'- -GGGCa-CCGGuuCGGGa--GG-UGGGa------CUG- -5'
1615 5' -60.9 NC_001347.2 + 168736 0.66 0.769923
Target:  5'- gUCCGUGGCCcguGCCCgcagCUGCUCUa-- -3'
miRNA:   3'- -GGGCACCGGuu-CGGGa---GGUGGGAcug -5'
1615 5' -60.9 NC_001347.2 + 87584 0.67 0.75561
Target:  5'- gCCCGUGGCCGugaGcagaccgcggugcacGCCCgugcCCACCagcGACg -3'
miRNA:   3'- -GGGCACCGGU---U---------------CGGGa---GGUGGga-CUG- -5'
1615 5' -60.9 NC_001347.2 + 156650 0.67 0.742881
Target:  5'- gCCG-GGCCucGGCCgCcgccgCCACCCaUGGCg -3'
miRNA:   3'- gGGCaCCGGu-UCGG-Ga----GGUGGG-ACUG- -5'
1615 5' -60.9 NC_001347.2 + 23364 0.67 0.724411
Target:  5'- aCCGUGGCCGugcagGGCaCCUgCACCUUc-- -3'
miRNA:   3'- gGGCACCGGU-----UCG-GGAgGUGGGAcug -5'
1615 5' -60.9 NC_001347.2 + 178719 0.68 0.705658
Target:  5'- aCCGgGGCUcAGCCUUCUcacGCCCcGGCg -3'
miRNA:   3'- gGGCaCCGGuUCGGGAGG---UGGGaCUG- -5'
1615 5' -60.9 NC_001347.2 + 201247 0.68 0.686685
Target:  5'- gCCGUcaaGGCCGccucuucuGGCCCUCCGCCa---- -3'
miRNA:   3'- gGGCA---CCGGU--------UCGGGAGGUGGgacug -5'
1615 5' -60.9 NC_001347.2 + 13885 0.68 0.677135
Target:  5'- uCCCGcGGuCCGauuGGCCCUCCACa--GGCg -3'
miRNA:   3'- -GGGCaCC-GGU---UCGGGAGGUGggaCUG- -5'
1615 5' -60.9 NC_001347.2 + 40256 0.68 0.654094
Target:  5'- aCCCGgcacgacacacccGGCaCAcGCCCgcgacaCACCCUGACa -3'
miRNA:   3'- -GGGCa------------CCG-GUuCGGGag----GUGGGACUG- -5'
1615 5' -60.9 NC_001347.2 + 86760 0.69 0.600143
Target:  5'- gCUCGUGGCCAacAGaCgCUCCACguucuuUCUGACg -3'
miRNA:   3'- -GGGCACCGGU--UC-GgGAGGUG------GGACUG- -5'
1615 5' -60.9 NC_001347.2 + 201671 0.7 0.590546
Target:  5'- aCCUGUGGaCCGA-CCacaUCUACUCUGACu -3'
miRNA:   3'- -GGGCACC-GGUUcGGg--AGGUGGGACUG- -5'
1615 5' -60.9 NC_001347.2 + 134915 0.7 0.580977
Target:  5'- gCCCGU-GCCGGGaCCCUCC-CCgUGGa -3'
miRNA:   3'- -GGGCAcCGGUUC-GGGAGGuGGgACUg -5'
1615 5' -60.9 NC_001347.2 + 150707 0.71 0.503291
Target:  5'- cCCCGUGGCCGuguucgacuuugccAG-CCUCUACCCUu-- -3'
miRNA:   3'- -GGGCACCGGU--------------UCgGGAGGUGGGAcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.