miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16150 3' -56 NC_004065.1 + 4382 0.66 0.967711
Target:  5'- gGCGGCGGCGggagccggaGUgcuguucggagcGGugGCCAcgGCGGGc -3'
miRNA:   3'- -UGCUGCCGCag-------UA------------CCugCGGU--UGCUC- -5'
16150 3' -56 NC_004065.1 + 151537 0.66 0.967711
Target:  5'- gACGGCGGCaagggccgCAaGGACaCCGACGAc -3'
miRNA:   3'- -UGCUGCCGca------GUaCCUGcGGUUGCUc -5'
16150 3' -56 NC_004065.1 + 170619 0.66 0.967711
Target:  5'- uUGGcCGGCGUCAgGGACGugaCCAGaggcCGAGa -3'
miRNA:   3'- uGCU-GCCGCAGUaCCUGC---GGUU----GCUC- -5'
16150 3' -56 NC_004065.1 + 138820 0.66 0.967711
Target:  5'- cCGGCGGCGcCgAUGccgcgcACGCCGACGGc -3'
miRNA:   3'- uGCUGCCGCaG-UACc-----UGCGGUUGCUc -5'
16150 3' -56 NC_004065.1 + 26339 0.66 0.967711
Target:  5'- gACGACGucgucguCGUCAUcGGCGCUGGCGAc -3'
miRNA:   3'- -UGCUGCc------GCAGUAcCUGCGGUUGCUc -5'
16150 3' -56 NC_004065.1 + 101525 0.66 0.967711
Target:  5'- aGCGuCGGCGUCu---AUGCCGGCGcAGa -3'
miRNA:   3'- -UGCuGCCGCAGuaccUGCGGUUGC-UC- -5'
16150 3' -56 NC_004065.1 + 212763 0.66 0.967711
Target:  5'- cCGGCGGUGaagaagaGGAgGUCGACGAGa -3'
miRNA:   3'- uGCUGCCGCagua---CCUgCGGUUGCUC- -5'
16150 3' -56 NC_004065.1 + 187933 0.66 0.967711
Target:  5'- uACGuCGGCG-CcgGcGACGCgcacauCAGCGAGg -3'
miRNA:   3'- -UGCuGCCGCaGuaC-CUGCG------GUUGCUC- -5'
16150 3' -56 NC_004065.1 + 33654 0.66 0.967112
Target:  5'- gACGAgcCGGCGgagauagcgggaCAUGGAgGCCgAGCGAu -3'
miRNA:   3'- -UGCU--GCCGCa-----------GUACCUgCGG-UUGCUc -5'
16150 3' -56 NC_004065.1 + 104160 0.66 0.966809
Target:  5'- cGCGGCGGUGUC--GGuCGCCGcuucggugccggauACGAc -3'
miRNA:   3'- -UGCUGCCGCAGuaCCuGCGGU--------------UGCUc -5'
16150 3' -56 NC_004065.1 + 30704 0.66 0.966505
Target:  5'- cGCGACGucgagguggcggacGCGUugaacgaCGUGGACGCCAccuucaGAGg -3'
miRNA:   3'- -UGCUGC--------------CGCA-------GUACCUGCGGUug----CUC- -5'
16150 3' -56 NC_004065.1 + 68587 0.66 0.964636
Target:  5'- gGCGGCGGCGaUCcagaGCGCCGACa-- -3'
miRNA:   3'- -UGCUGCCGC-AGuaccUGCGGUUGcuc -5'
16150 3' -56 NC_004065.1 + 98692 0.66 0.964636
Target:  5'- uCGACGGgaccCGUCAUggGGACGcCCAGCu-- -3'
miRNA:   3'- uGCUGCC----GCAGUA--CCUGC-GGUUGcuc -5'
16150 3' -56 NC_004065.1 + 81186 0.66 0.964636
Target:  5'- cGCGGCGGcCGcCuc-GugGCCgAGCGAGg -3'
miRNA:   3'- -UGCUGCC-GCaGuacCugCGG-UUGCUC- -5'
16150 3' -56 NC_004065.1 + 135153 0.66 0.964636
Target:  5'- gACGACGGgGaCGUcGAUGaCGACGAGg -3'
miRNA:   3'- -UGCUGCCgCaGUAcCUGCgGUUGCUC- -5'
16150 3' -56 NC_004065.1 + 65434 0.66 0.964636
Target:  5'- uGCGAgCGGCGgcCGUGGugGCUcuggagcGCGAa -3'
miRNA:   3'- -UGCU-GCCGCa-GUACCugCGGu------UGCUc -5'
16150 3' -56 NC_004065.1 + 128168 0.66 0.964636
Target:  5'- uGCGGCGGCGauagCGcccccGACGCCcccGCGAGc -3'
miRNA:   3'- -UGCUGCCGCa---GUac---CUGCGGu--UGCUC- -5'
16150 3' -56 NC_004065.1 + 30455 0.66 0.964636
Target:  5'- cCGaaGCGGCGUC-UGGACcgcgGCaCGAUGGGg -3'
miRNA:   3'- uGC--UGCCGCAGuACCUG----CG-GUUGCUC- -5'
16150 3' -56 NC_004065.1 + 80400 0.66 0.964317
Target:  5'- cCGACGGCGcCggugacgGUGGACGaCAAcCGGGu -3'
miRNA:   3'- uGCUGCCGCaG-------UACCUGCgGUU-GCUC- -5'
16150 3' -56 NC_004065.1 + 111600 0.66 0.961361
Target:  5'- -gGACGcCGcCGUGuuCGCCGGCGAGa -3'
miRNA:   3'- ugCUGCcGCaGUACcuGCGGUUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.