miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16150 5' -60.1 NC_004065.1 + 23499 0.66 0.852758
Target:  5'- aUUCGCGUCcGCGcuaucGCCGUcugGUGcGUGGUCu -3'
miRNA:   3'- -AGGUGCAGaCGC-----CGGCG---UAC-CACCGG- -5'
16150 5' -60.1 NC_004065.1 + 120142 0.66 0.84525
Target:  5'- cCCcCGaC-GCGGCCGCGgcgacgccGGUGGCa -3'
miRNA:   3'- aGGuGCaGaCGCCGGCGUa-------CCACCGg -5'
16150 5' -60.1 NC_004065.1 + 205499 0.66 0.84525
Target:  5'- gCCGuCGUCgcUGCcGCCGCcaucuUGG-GGCCg -3'
miRNA:   3'- aGGU-GCAG--ACGcCGGCGu----ACCaCCGG- -5'
16150 5' -60.1 NC_004065.1 + 32964 0.66 0.845249
Target:  5'- gUCgACGUC-GCGGCggaGCAUgacGGaGGCCu -3'
miRNA:   3'- -AGgUGCAGaCGCCGg--CGUA---CCaCCGG- -5'
16150 5' -60.1 NC_004065.1 + 26948 0.66 0.845249
Target:  5'- aCCGC-UCcgGCGGCCGCGgcg-GGCUc -3'
miRNA:   3'- aGGUGcAGa-CGCCGGCGUaccaCCGG- -5'
16150 5' -60.1 NC_004065.1 + 159713 0.66 0.840662
Target:  5'- uUCC-UGUacGCGGCCGUGUGGggggugcugcugaaGGCCg -3'
miRNA:   3'- -AGGuGCAgaCGCCGGCGUACCa-------------CCGG- -5'
16150 5' -60.1 NC_004065.1 + 179387 0.66 0.837569
Target:  5'- gCCcUGUCguacaaCGGCUGUAUccaGGUGGCCu -3'
miRNA:   3'- aGGuGCAGac----GCCGGCGUA---CCACCGG- -5'
16150 5' -60.1 NC_004065.1 + 148858 0.66 0.837569
Target:  5'- gCCGCGaUCgaggagGCGGCgGCggGG-GGCg -3'
miRNA:   3'- aGGUGC-AGa-----CGCCGgCGuaCCaCCGg -5'
16150 5' -60.1 NC_004065.1 + 118168 0.66 0.837569
Target:  5'- aCCGCGgcgGCGGCCGuCAcGGcuGCCg -3'
miRNA:   3'- aGGUGCagaCGCCGGC-GUaCCacCGG- -5'
16150 5' -60.1 NC_004065.1 + 53854 0.66 0.837569
Target:  5'- cUUCGCG---GCGGUCGCGccgGGaUGGCCa -3'
miRNA:   3'- -AGGUGCagaCGCCGGCGUa--CC-ACCGG- -5'
16150 5' -60.1 NC_004065.1 + 62033 0.66 0.837569
Target:  5'- gCCAuCG-CUGCuGCUGC-UGGUGGUg -3'
miRNA:   3'- aGGU-GCaGACGcCGGCGuACCACCGg -5'
16150 5' -60.1 NC_004065.1 + 49278 0.66 0.836791
Target:  5'- aCCACGcacuagaUgaGCGuGCCGCAUGG--GCCa -3'
miRNA:   3'- aGGUGC-------AgaCGC-CGGCGUACCacCGG- -5'
16150 5' -60.1 NC_004065.1 + 198124 0.66 0.835232
Target:  5'- aCgAgGUCUGCGagcuggucaucgccGCCGCcaugGGUGGCg -3'
miRNA:   3'- aGgUgCAGACGC--------------CGGCGua--CCACCGg -5'
16150 5' -60.1 NC_004065.1 + 167413 0.66 0.829721
Target:  5'- gCCGCGgCUGCuGCCGCcgGcGggGGCg -3'
miRNA:   3'- aGGUGCaGACGcCGGCGuaC-Ca-CCGg -5'
16150 5' -60.1 NC_004065.1 + 59757 0.66 0.829721
Target:  5'- aCCGCGU----GGCCG-AUGGUGGCg -3'
miRNA:   3'- aGGUGCAgacgCCGGCgUACCACCGg -5'
16150 5' -60.1 NC_004065.1 + 62365 0.66 0.829721
Target:  5'- uUCgACGgcgGUGGCgGCGggggUGGUGGCg -3'
miRNA:   3'- -AGgUGCagaCGCCGgCGU----ACCACCGg -5'
16150 5' -60.1 NC_004065.1 + 194083 0.66 0.824935
Target:  5'- gUCCgACGacCUGCGGCCGCGacagagcaccgaacGGUcGCCa -3'
miRNA:   3'- -AGG-UGCa-GACGCCGGCGUa-------------CCAcCGG- -5'
16150 5' -60.1 NC_004065.1 + 142763 0.66 0.821712
Target:  5'- cCCGCGaCgacGaCGGCCuGCugGUGGUGGCg -3'
miRNA:   3'- aGGUGCaGa--C-GCCGG-CG--UACCACCGg -5'
16150 5' -60.1 NC_004065.1 + 229537 0.66 0.81355
Target:  5'- uUCCGCGgacGCGGCgCGCGgcccGGaGGCUg -3'
miRNA:   3'- -AGGUGCagaCGCCG-GCGUa---CCaCCGG- -5'
16150 5' -60.1 NC_004065.1 + 163067 0.67 0.80524
Target:  5'- cCCGCGUuuuggaCUGCacgaacggcgagGGCCGCAccgagaacUGGgGGCCc -3'
miRNA:   3'- aGGUGCA------GACG------------CCGGCGU--------ACCaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.