miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16151 3' -57.5 NC_004065.1 + 101721 0.66 0.938798
Target:  5'- uGGugcUCCGUCGGUGUCucCGACAgCAu -3'
miRNA:   3'- gCC---AGGCAGUCGCAGucGCUGUgGUc -5'
16151 3' -57.5 NC_004065.1 + 136637 0.66 0.938798
Target:  5'- gCGGUCCGgagCGGCGUggauccugguggCgAGCGACgggcgggucugGCCGGc -3'
miRNA:   3'- -GCCAGGCa--GUCGCA------------G-UCGCUG-----------UGGUC- -5'
16151 3' -57.5 NC_004065.1 + 159984 0.66 0.938798
Target:  5'- uGG-CCGUCuccaccGUGaCgAGCGACGCCAGc -3'
miRNA:   3'- gCCaGGCAGu-----CGCaG-UCGCUGUGGUC- -5'
16151 3' -57.5 NC_004065.1 + 123401 0.66 0.936031
Target:  5'- gGGUCCaUCGGUcagggcccugauggaGUCGGCG-CACCGu -3'
miRNA:   3'- gCCAGGcAGUCG---------------CAGUCGCuGUGGUc -5'
16151 3' -57.5 NC_004065.1 + 186520 0.66 0.934142
Target:  5'- uCGGaucUCCGUCucuccaAGUGauguaUCGGCGGCGCCGa -3'
miRNA:   3'- -GCC---AGGCAG------UCGC-----AGUCGCUGUGGUc -5'
16151 3' -57.5 NC_004065.1 + 100142 0.66 0.934142
Target:  5'- gGGUCCGccgCAGCG-C-GCGGCA-CAGg -3'
miRNA:   3'- gCCAGGCa--GUCGCaGuCGCUGUgGUC- -5'
16151 3' -57.5 NC_004065.1 + 146536 0.66 0.934142
Target:  5'- aGGUCCuugGUCGGCcugcccgacaucGUCGGCGuCGCgGGu -3'
miRNA:   3'- gCCAGG---CAGUCG------------CAGUCGCuGUGgUC- -5'
16151 3' -57.5 NC_004065.1 + 146736 0.66 0.931244
Target:  5'- aGcUCCGUCgcccacaucuaugugGGCGUCGGCGGCgucuGCCGc -3'
miRNA:   3'- gCcAGGCAG---------------UCGCAGUCGCUG----UGGUc -5'
16151 3' -57.5 NC_004065.1 + 177923 0.66 0.929268
Target:  5'- gCGGUCuaCGUCGGUcuUCGGCGcCGCCGc -3'
miRNA:   3'- -GCCAG--GCAGUCGc-AGUCGCuGUGGUc -5'
16151 3' -57.5 NC_004065.1 + 87625 0.66 0.929268
Target:  5'- aGGUCgauCGUCAGCGcCAGCucgGGCGCaaaAGu -3'
miRNA:   3'- gCCAG---GCAGUCGCaGUCG---CUGUGg--UC- -5'
16151 3' -57.5 NC_004065.1 + 130357 0.66 0.929268
Target:  5'- cCGGacgCUGUCGGCG-CcGCGcCGCCGGc -3'
miRNA:   3'- -GCCa--GGCAGUCGCaGuCGCuGUGGUC- -5'
16151 3' -57.5 NC_004065.1 + 44666 0.66 0.929268
Target:  5'- aCGGcgUCGUCGGCGacgaAGCGAUggucgucgACCAGa -3'
miRNA:   3'- -GCCa-GGCAGUCGCag--UCGCUG--------UGGUC- -5'
16151 3' -57.5 NC_004065.1 + 197803 0.66 0.929268
Target:  5'- uGGUCac-CAGCGcCcGCGGCGCCAc -3'
miRNA:   3'- gCCAGgcaGUCGCaGuCGCUGUGGUc -5'
16151 3' -57.5 NC_004065.1 + 156283 0.66 0.929268
Target:  5'- uCGGgaggCgGgaguagCGGCGgcagCAGUGGCGCCAGc -3'
miRNA:   3'- -GCCa---GgCa-----GUCGCa---GUCGCUGUGGUC- -5'
16151 3' -57.5 NC_004065.1 + 149207 0.66 0.924176
Target:  5'- uGGUCCGggaGGCGaugaagCAGUG-CACCAa -3'
miRNA:   3'- gCCAGGCag-UCGCa-----GUCGCuGUGGUc -5'
16151 3' -57.5 NC_004065.1 + 79552 0.66 0.924176
Target:  5'- gCGGUCgaugCGGCG-CAGCGGCGCUu- -3'
miRNA:   3'- -GCCAGgca-GUCGCaGUCGCUGUGGuc -5'
16151 3' -57.5 NC_004065.1 + 143459 0.66 0.924176
Target:  5'- aGGUgCCGcUCuGCGUCGucGUGACGCCc- -3'
miRNA:   3'- gCCA-GGC-AGuCGCAGU--CGCUGUGGuc -5'
16151 3' -57.5 NC_004065.1 + 99674 0.66 0.922605
Target:  5'- gCGGcgCCGaCAGCGUCcGGUGACAaagagcgagagcucCCGGg -3'
miRNA:   3'- -GCCa-GGCaGUCGCAG-UCGCUGU--------------GGUC- -5'
16151 3' -57.5 NC_004065.1 + 128746 0.66 0.918864
Target:  5'- aGGcagCCGUCGGCagcggCAGCGGCAgCGu -3'
miRNA:   3'- gCCa--GGCAGUCGca---GUCGCUGUgGUc -5'
16151 3' -57.5 NC_004065.1 + 120150 0.66 0.918864
Target:  5'- gCGG-CCG-CGGCGacgcCGGUGGCACCGc -3'
miRNA:   3'- -GCCaGGCaGUCGCa---GUCGCUGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.