miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16151 5' -53.8 NC_004065.1 + 186857 0.65 0.986453
Target:  5'- gUGUgaGAUGUUUaucauggUGGACGCCGggGggGCc -3'
miRNA:   3'- -ACGa-CUACAGG-------ACCUGCGGCuuCa-UG- -5'
16151 5' -53.8 NC_004065.1 + 30693 0.66 0.984941
Target:  5'- aGCUG--GUCCgucGcGACGUCGAGGUGg -3'
miRNA:   3'- aCGACuaCAGGa--C-CUGCGGCUUCAUg -5'
16151 5' -53.8 NC_004065.1 + 69395 0.66 0.984941
Target:  5'- cGCUGGcggaacagcUG-CCgacgGGGCGCC-AGGUGCg -3'
miRNA:   3'- aCGACU---------ACaGGa---CCUGCGGcUUCAUG- -5'
16151 5' -53.8 NC_004065.1 + 174139 0.66 0.984229
Target:  5'- gUGCggcaucggCCUGGACGCCGGAucgACg -3'
miRNA:   3'- -ACGacuaca--GGACCUGCGGCUUca-UG- -5'
16151 5' -53.8 NC_004065.1 + 68634 0.66 0.983114
Target:  5'- aGCUGgcGUCgCUGGcacagGCGgCCGAGgcGUACg -3'
miRNA:   3'- aCGACuaCAG-GACC-----UGC-GGCUU--CAUG- -5'
16151 5' -53.8 NC_004065.1 + 100907 0.66 0.983114
Target:  5'- cUGCUGAUcGUCCggcaGGuucuugucguACGCCGu-GUGCu -3'
miRNA:   3'- -ACGACUA-CAGGa---CC----------UGCGGCuuCAUG- -5'
16151 5' -53.8 NC_004065.1 + 32864 0.66 0.983114
Target:  5'- aGCUGgcGUcCCUGGucgagaggcGCGCCGgcGaGCg -3'
miRNA:   3'- aCGACuaCA-GGACC---------UGCGGCuuCaUG- -5'
16151 5' -53.8 NC_004065.1 + 99502 0.66 0.983114
Target:  5'- cGUUGggGUcCCUGGcGCGCaCGAGGaggACg -3'
miRNA:   3'- aCGACuaCA-GGACC-UGCG-GCUUCa--UG- -5'
16151 5' -53.8 NC_004065.1 + 30986 0.66 0.983114
Target:  5'- gGUUGGUGUgUgUGuGCGCCGggGUGg -3'
miRNA:   3'- aCGACUACA-GgACcUGCGGCuuCAUg -5'
16151 5' -53.8 NC_004065.1 + 35500 0.66 0.981124
Target:  5'- cUGCUGAguaacgacGUCUUcaGGAuCGCCGAGG-ACa -3'
miRNA:   3'- -ACGACUa-------CAGGA--CCU-GCGGCUUCaUG- -5'
16151 5' -53.8 NC_004065.1 + 179553 0.66 0.980916
Target:  5'- cGgUGAUgacgacgagcaucGUgCUGGGCGCUGAAGggGCg -3'
miRNA:   3'- aCgACUA-------------CAgGACCUGCGGCUUCa-UG- -5'
16151 5' -53.8 NC_004065.1 + 27673 0.66 0.978963
Target:  5'- cGgaGAUccggCCUGGAgGCCGGAGg-- -3'
miRNA:   3'- aCgaCUAca--GGACCUgCGGCUUCaug -5'
16151 5' -53.8 NC_004065.1 + 68864 0.66 0.976625
Target:  5'- aGCUGAccgaggaccugcUGUaCCUGcaGACgGCCGAGGUGa -3'
miRNA:   3'- aCGACU------------ACA-GGAC--CUG-CGGCUUCAUg -5'
16151 5' -53.8 NC_004065.1 + 77957 0.67 0.974101
Target:  5'- aUGCggacGcgGUCgUGGAgCGCCguGAAGUACc -3'
miRNA:   3'- -ACGa---CuaCAGgACCU-GCGG--CUUCAUG- -5'
16151 5' -53.8 NC_004065.1 + 122716 0.67 0.974101
Target:  5'- gUGCUGAgcGUUCUGG-CGUCGGuAGUGg -3'
miRNA:   3'- -ACGACUa-CAGGACCuGCGGCU-UCAUg -5'
16151 5' -53.8 NC_004065.1 + 142780 0.67 0.96535
Target:  5'- cUGCUGGUGg--UGG-CGCCGggGgcgGCc -3'
miRNA:   3'- -ACGACUACaggACCuGCGGCuuCa--UG- -5'
16151 5' -53.8 NC_004065.1 + 142716 0.67 0.962019
Target:  5'- gGCgucgGggGUCCUGGGCGCCu------ -3'
miRNA:   3'- aCGa---CuaCAGGACCUGCGGcuucaug -5'
16151 5' -53.8 NC_004065.1 + 147710 0.68 0.950712
Target:  5'- gGCUcgGAUGagCUGGACGCCGcgcUACg -3'
miRNA:   3'- aCGA--CUACagGACCUGCGGCuucAUG- -5'
16151 5' -53.8 NC_004065.1 + 67098 0.68 0.946492
Target:  5'- gUGCUGGacacgacGUCgCUGGACGCCGugcuGG-ACa -3'
miRNA:   3'- -ACGACUa------CAG-GACCUGCGGCu---UCaUG- -5'
16151 5' -53.8 NC_004065.1 + 72029 0.68 0.942039
Target:  5'- cGCUGAUGgcggCgCUGcAC-CCGGAGUACg -3'
miRNA:   3'- aCGACUACa---G-GACcUGcGGCUUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.