miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16152 3' -54.8 NC_004065.1 + 33115 0.66 0.983111
Target:  5'- cCCAGAUCgaUGuCCaUGcagUCGACGgCCGUGAa -3'
miRNA:   3'- -GGUCUAG--AC-GG-ACa--GGCUGU-GGCACU- -5'
16152 3' -54.8 NC_004065.1 + 62250 0.66 0.979062
Target:  5'- aCGGAgucGCCUGagugCCGACACuaaCGUGAc -3'
miRNA:   3'- gGUCUagaCGGACa---GGCUGUG---GCACU- -5'
16152 3' -54.8 NC_004065.1 + 202523 0.66 0.977717
Target:  5'- aCAGAUCagaggcgcgcucaaaUGCUggGaUCCGGgACCGUGAc -3'
miRNA:   3'- gGUCUAG---------------ACGGa-C-AGGCUgUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 190063 0.66 0.976786
Target:  5'- aCAGAgaguUCUGuUCUGUCCGACaaugaGCCGcGGc -3'
miRNA:   3'- gGUCU----AGAC-GGACAGGCUG-----UGGCaCU- -5'
16152 3' -54.8 NC_004065.1 + 225337 0.66 0.976786
Target:  5'- cCCGGAUC-GUUagUGUCCGcCGCCG-GAg -3'
miRNA:   3'- -GGUCUAGaCGG--ACAGGCuGUGGCaCU- -5'
16152 3' -54.8 NC_004065.1 + 32639 0.66 0.976786
Target:  5'- aCCGGGaCUGCCUGUCa-ACAUCGc-- -3'
miRNA:   3'- -GGUCUaGACGGACAGgcUGUGGCacu -5'
16152 3' -54.8 NC_004065.1 + 150426 0.66 0.976549
Target:  5'- gCGGGUCcgGCCUGUCCaacagguGACACuCGg-- -3'
miRNA:   3'- gGUCUAGa-CGGACAGG-------CUGUG-GCacu -5'
16152 3' -54.8 NC_004065.1 + 154666 0.66 0.974334
Target:  5'- uCCAGcugCU-CCUcUCgGGCACCGUGAg -3'
miRNA:   3'- -GGUCua-GAcGGAcAGgCUGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 7644 0.66 0.971698
Target:  5'- cUCGGugauAUCUGCau-UCCGGCAUCGUGGc -3'
miRNA:   3'- -GGUC----UAGACGgacAGGCUGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 81251 0.66 0.971698
Target:  5'- -gGGAuUCUGCCUGUUCuucauccugGACGCCGagGAc -3'
miRNA:   3'- ggUCU-AGACGGACAGG---------CUGUGGCa-CU- -5'
16152 3' -54.8 NC_004065.1 + 156157 0.67 0.96858
Target:  5'- aCCGGcgCUGCCgGUCCGAucaacacuauuauCACUGa-- -3'
miRNA:   3'- -GGUCuaGACGGaCAGGCU-------------GUGGCacu -5'
16152 3' -54.8 NC_004065.1 + 44773 0.67 0.965854
Target:  5'- gCCAgGGUCguccgagGCCUGggCCGcACACCGUc- -3'
miRNA:   3'- -GGU-CUAGa------CGGACa-GGC-UGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 137483 0.67 0.961628
Target:  5'- aCCAGGUCUuCCcGUgCCGccggggcacgaggaACACCGUGGc -3'
miRNA:   3'- -GGUCUAGAcGGaCA-GGC--------------UGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 174243 0.67 0.959208
Target:  5'- gCCGcGAUC-GCCUGcUCGGCGCCGaGAc -3'
miRNA:   3'- -GGU-CUAGaCGGACaGGCUGUGGCaCU- -5'
16152 3' -54.8 NC_004065.1 + 103309 0.67 0.955572
Target:  5'- aUCAGcgCcGCCUGUCUGACccACC-UGAa -3'
miRNA:   3'- -GGUCuaGaCGGACAGGCUG--UGGcACU- -5'
16152 3' -54.8 NC_004065.1 + 199651 0.68 0.951722
Target:  5'- gCCAGGUCacGuCCaUGUCCGGguCCGUGu -3'
miRNA:   3'- -GGUCUAGa-C-GG-ACAGGCUguGGCACu -5'
16152 3' -54.8 NC_004065.1 + 53795 0.68 0.951722
Target:  5'- gCAGGUCUGCgCgGUCCGccgagaGCCGgUGAa -3'
miRNA:   3'- gGUCUAGACG-GaCAGGCug----UGGC-ACU- -5'
16152 3' -54.8 NC_004065.1 + 157546 0.68 0.951722
Target:  5'- cCCGGucuUCaGCCgcgCCGACACCGUc- -3'
miRNA:   3'- -GGUCu--AGaCGGacaGGCUGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 80967 0.68 0.943368
Target:  5'- cCCcGAUCgGCCUG-CCGcCGCCGUc- -3'
miRNA:   3'- -GGuCUAGaCGGACaGGCuGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 151253 0.68 0.943368
Target:  5'- uCCAGGUCcugGCCgcuaaccUCGACugCGUGAu -3'
miRNA:   3'- -GGUCUAGa--CGGaca----GGCUGugGCACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.