miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16152 3' -54.8 NC_004065.1 + 148872 1.11 0.004709
Target:  5'- aCCAGAUCUGCCUGUCCGACACCGUGAu -3'
miRNA:   3'- -GGUCUAGACGGACAGGCUGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 27398 0.79 0.441255
Target:  5'- cUCAGGUCgagGCCUGUCCGGCguauGCCGUc- -3'
miRNA:   3'- -GGUCUAGa--CGGACAGGCUG----UGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 88820 0.77 0.533667
Target:  5'- gCGGAUCUGCCUGUCguCGGCGCgGUc- -3'
miRNA:   3'- gGUCUAGACGGACAG--GCUGUGgCAcu -5'
16152 3' -54.8 NC_004065.1 + 130805 0.74 0.691483
Target:  5'- gCGGAUC-GCCUGgCCGGCGCUGuUGAg -3'
miRNA:   3'- gGUCUAGaCGGACaGGCUGUGGC-ACU- -5'
16152 3' -54.8 NC_004065.1 + 198650 0.73 0.758556
Target:  5'- aCCAGGUgCagcgUGUC-GUCCGACGCCGUGu -3'
miRNA:   3'- -GGUCUA-G----ACGGaCAGGCUGUGGCACu -5'
16152 3' -54.8 NC_004065.1 + 184956 0.73 0.758556
Target:  5'- uCCAGAgCUGCgUGUCCuGACACUGa-- -3'
miRNA:   3'- -GGUCUaGACGgACAGG-CUGUGGCacu -5'
16152 3' -54.8 NC_004065.1 + 207979 0.72 0.785886
Target:  5'- aCCGGAgggauaccgCgGCCUGcCCGGgGCCGUGGc -3'
miRNA:   3'- -GGUCUa--------GaCGGACaGGCUgUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 146533 0.72 0.812041
Target:  5'- aUCAGGUCcuuggucgGCCUGcCCGACAUCGUc- -3'
miRNA:   3'- -GGUCUAGa-------CGGACaGGCUGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 111259 0.7 0.867341
Target:  5'- ----cUCUGCCUcgUCGGCGCCGUGAc -3'
miRNA:   3'- ggucuAGACGGAcaGGCUGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 157776 0.7 0.881431
Target:  5'- gCAGAUCUGCUucaccagGUCCGACAUCc--- -3'
miRNA:   3'- gGUCUAGACGGa------CAGGCUGUGGcacu -5'
16152 3' -54.8 NC_004065.1 + 29890 0.7 0.894042
Target:  5'- cCCAGGgccagCUGCuCUGUcaccaggagcggaCCGACGCCGUc- -3'
miRNA:   3'- -GGUCUa----GACG-GACA-------------GGCUGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 63713 0.69 0.900987
Target:  5'- gCCGuGAUC-GCCUGguggUCGGCGCCGUaGAc -3'
miRNA:   3'- -GGU-CUAGaCGGACa---GGCUGUGGCA-CU- -5'
16152 3' -54.8 NC_004065.1 + 123277 0.69 0.90707
Target:  5'- gCAGAUguaCUGCagGUCCGucuCGCCGUGGa -3'
miRNA:   3'- gGUCUA---GACGgaCAGGCu--GUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 148383 0.69 0.912931
Target:  5'- aCCAGAgacaugCUGCUgaUGUCCugGACGCCGa-- -3'
miRNA:   3'- -GGUCUa-----GACGG--ACAGG--CUGUGGCacu -5'
16152 3' -54.8 NC_004065.1 + 148632 0.69 0.912931
Target:  5'- cCCGGGUgggcaaguaCUGCCUG-CagGACGCCGUGc -3'
miRNA:   3'- -GGUCUA---------GACGGACaGg-CUGUGGCACu -5'
16152 3' -54.8 NC_004065.1 + 147127 0.69 0.923979
Target:  5'- uCCAGuaccUCUGCCccGUCUGccgcauCACCGUGGc -3'
miRNA:   3'- -GGUCu---AGACGGa-CAGGCu-----GUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 77481 0.68 0.934124
Target:  5'- uCCAGuacaagCUGCCgaagaagCCGGCGCCGgcgGAg -3'
miRNA:   3'- -GGUCua----GACGGaca----GGCUGUGGCa--CU- -5'
16152 3' -54.8 NC_004065.1 + 204119 0.68 0.943368
Target:  5'- aCCuGcgCaugGCCUGgcccgCCGGgGCCGUGAu -3'
miRNA:   3'- -GGuCuaGa--CGGACa----GGCUgUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 151253 0.68 0.943368
Target:  5'- uCCAGGUCcugGCCgcuaaccUCGACugCGUGAu -3'
miRNA:   3'- -GGUCUAGa--CGGaca----GGCUGugGCACU- -5'
16152 3' -54.8 NC_004065.1 + 109466 0.68 0.943368
Target:  5'- gCAGAUCgagaGCCUGUCCGucuCGCag-GAg -3'
miRNA:   3'- gGUCUAGa---CGGACAGGCu--GUGgcaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.