miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16152 3' -54.8 NC_004065.1 + 7644 0.66 0.971698
Target:  5'- cUCGGugauAUCUGCau-UCCGGCAUCGUGGc -3'
miRNA:   3'- -GGUC----UAGACGgacAGGCUGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 27398 0.79 0.441255
Target:  5'- cUCAGGUCgagGCCUGUCCGGCguauGCCGUc- -3'
miRNA:   3'- -GGUCUAGa--CGGACAGGCUG----UGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 29890 0.7 0.894042
Target:  5'- cCCAGGgccagCUGCuCUGUcaccaggagcggaCCGACGCCGUc- -3'
miRNA:   3'- -GGUCUa----GACG-GACA-------------GGCUGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 32639 0.66 0.976786
Target:  5'- aCCGGGaCUGCCUGUCa-ACAUCGc-- -3'
miRNA:   3'- -GGUCUaGACGGACAGgcUGUGGCacu -5'
16152 3' -54.8 NC_004065.1 + 33115 0.66 0.983111
Target:  5'- cCCAGAUCgaUGuCCaUGcagUCGACGgCCGUGAa -3'
miRNA:   3'- -GGUCUAG--AC-GG-ACa--GGCUGU-GGCACU- -5'
16152 3' -54.8 NC_004065.1 + 44773 0.67 0.965854
Target:  5'- gCCAgGGUCguccgagGCCUGggCCGcACACCGUc- -3'
miRNA:   3'- -GGU-CUAGa------CGGACa-GGC-UGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 53795 0.68 0.951722
Target:  5'- gCAGGUCUGCgCgGUCCGccgagaGCCGgUGAa -3'
miRNA:   3'- gGUCUAGACG-GaCAGGCug----UGGC-ACU- -5'
16152 3' -54.8 NC_004065.1 + 62250 0.66 0.979062
Target:  5'- aCGGAgucGCCUGagugCCGACACuaaCGUGAc -3'
miRNA:   3'- gGUCUagaCGGACa---GGCUGUG---GCACU- -5'
16152 3' -54.8 NC_004065.1 + 63713 0.69 0.900987
Target:  5'- gCCGuGAUC-GCCUGguggUCGGCGCCGUaGAc -3'
miRNA:   3'- -GGU-CUAGaCGGACa---GGCUGUGGCA-CU- -5'
16152 3' -54.8 NC_004065.1 + 77481 0.68 0.934124
Target:  5'- uCCAGuacaagCUGCCgaagaagCCGGCGCCGgcgGAg -3'
miRNA:   3'- -GGUCua----GACGGaca----GGCUGUGGCa--CU- -5'
16152 3' -54.8 NC_004065.1 + 80967 0.68 0.943368
Target:  5'- cCCcGAUCgGCCUG-CCGcCGCCGUc- -3'
miRNA:   3'- -GGuCUAGaCGGACaGGCuGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 81251 0.66 0.971698
Target:  5'- -gGGAuUCUGCCUGUUCuucauccugGACGCCGagGAc -3'
miRNA:   3'- ggUCU-AGACGGACAGG---------CUGUGGCa-CU- -5'
16152 3' -54.8 NC_004065.1 + 88820 0.77 0.533667
Target:  5'- gCGGAUCUGCCUGUCguCGGCGCgGUc- -3'
miRNA:   3'- gGUCUAGACGGACAG--GCUGUGgCAcu -5'
16152 3' -54.8 NC_004065.1 + 103309 0.67 0.955572
Target:  5'- aUCAGcgCcGCCUGUCUGACccACC-UGAa -3'
miRNA:   3'- -GGUCuaGaCGGACAGGCUG--UGGcACU- -5'
16152 3' -54.8 NC_004065.1 + 109466 0.68 0.943368
Target:  5'- gCAGAUCgagaGCCUGUCCGucuCGCag-GAg -3'
miRNA:   3'- gGUCUAGa---CGGACAGGCu--GUGgcaCU- -5'
16152 3' -54.8 NC_004065.1 + 111259 0.7 0.867341
Target:  5'- ----cUCUGCCUcgUCGGCGCCGUGAc -3'
miRNA:   3'- ggucuAGACGGAcaGGCUGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 123277 0.69 0.90707
Target:  5'- gCAGAUguaCUGCagGUCCGucuCGCCGUGGa -3'
miRNA:   3'- gGUCUA---GACGgaCAGGCu--GUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 130805 0.74 0.691483
Target:  5'- gCGGAUC-GCCUGgCCGGCGCUGuUGAg -3'
miRNA:   3'- gGUCUAGaCGGACaGGCUGUGGC-ACU- -5'
16152 3' -54.8 NC_004065.1 + 137483 0.67 0.961628
Target:  5'- aCCAGGUCUuCCcGUgCCGccggggcacgaggaACACCGUGGc -3'
miRNA:   3'- -GGUCUAGAcGGaCA-GGC--------------UGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 146533 0.72 0.812041
Target:  5'- aUCAGGUCcuuggucgGCCUGcCCGACAUCGUc- -3'
miRNA:   3'- -GGUCUAGa-------CGGACaGGCUGUGGCAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.