miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16152 3' -54.8 NC_004065.1 + 147127 0.69 0.923979
Target:  5'- uCCAGuaccUCUGCCccGUCUGccgcauCACCGUGGc -3'
miRNA:   3'- -GGUCu---AGACGGa-CAGGCu-----GUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 148383 0.69 0.912931
Target:  5'- aCCAGAgacaugCUGCUgaUGUCCugGACGCCGa-- -3'
miRNA:   3'- -GGUCUa-----GACGG--ACAGG--CUGUGGCacu -5'
16152 3' -54.8 NC_004065.1 + 148632 0.69 0.912931
Target:  5'- cCCGGGUgggcaaguaCUGCCUG-CagGACGCCGUGc -3'
miRNA:   3'- -GGUCUA---------GACGGACaGg-CUGUGGCACu -5'
16152 3' -54.8 NC_004065.1 + 148872 1.11 0.004709
Target:  5'- aCCAGAUCUGCCUGUCCGACACCGUGAu -3'
miRNA:   3'- -GGUCUAGACGGACAGGCUGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 150426 0.66 0.976549
Target:  5'- gCGGGUCcgGCCUGUCCaacagguGACACuCGg-- -3'
miRNA:   3'- gGUCUAGa-CGGACAGG-------CUGUG-GCacu -5'
16152 3' -54.8 NC_004065.1 + 151253 0.68 0.943368
Target:  5'- uCCAGGUCcugGCCgcuaaccUCGACugCGUGAu -3'
miRNA:   3'- -GGUCUAGa--CGGaca----GGCUGugGCACU- -5'
16152 3' -54.8 NC_004065.1 + 154666 0.66 0.974334
Target:  5'- uCCAGcugCU-CCUcUCgGGCACCGUGAg -3'
miRNA:   3'- -GGUCua-GAcGGAcAGgCUGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 156157 0.67 0.96858
Target:  5'- aCCGGcgCUGCCgGUCCGAucaacacuauuauCACUGa-- -3'
miRNA:   3'- -GGUCuaGACGGaCAGGCU-------------GUGGCacu -5'
16152 3' -54.8 NC_004065.1 + 157546 0.68 0.951722
Target:  5'- cCCGGucuUCaGCCgcgCCGACACCGUc- -3'
miRNA:   3'- -GGUCu--AGaCGGacaGGCUGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 157776 0.7 0.881431
Target:  5'- gCAGAUCUGCUucaccagGUCCGACAUCc--- -3'
miRNA:   3'- gGUCUAGACGGa------CAGGCUGUGGcacu -5'
16152 3' -54.8 NC_004065.1 + 174243 0.67 0.959208
Target:  5'- gCCGcGAUC-GCCUGcUCGGCGCCGaGAc -3'
miRNA:   3'- -GGU-CUAGaCGGACaGGCUGUGGCaCU- -5'
16152 3' -54.8 NC_004065.1 + 184956 0.73 0.758556
Target:  5'- uCCAGAgCUGCgUGUCCuGACACUGa-- -3'
miRNA:   3'- -GGUCUaGACGgACAGG-CUGUGGCacu -5'
16152 3' -54.8 NC_004065.1 + 190063 0.66 0.976786
Target:  5'- aCAGAgaguUCUGuUCUGUCCGACaaugaGCCGcGGc -3'
miRNA:   3'- gGUCU----AGAC-GGACAGGCUG-----UGGCaCU- -5'
16152 3' -54.8 NC_004065.1 + 198650 0.73 0.758556
Target:  5'- aCCAGGUgCagcgUGUC-GUCCGACGCCGUGu -3'
miRNA:   3'- -GGUCUA-G----ACGGaCAGGCUGUGGCACu -5'
16152 3' -54.8 NC_004065.1 + 199651 0.68 0.951722
Target:  5'- gCCAGGUCacGuCCaUGUCCGGguCCGUGu -3'
miRNA:   3'- -GGUCUAGa-C-GG-ACAGGCUguGGCACu -5'
16152 3' -54.8 NC_004065.1 + 202523 0.66 0.977717
Target:  5'- aCAGAUCagaggcgcgcucaaaUGCUggGaUCCGGgACCGUGAc -3'
miRNA:   3'- gGUCUAG---------------ACGGa-C-AGGCUgUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 204119 0.68 0.943368
Target:  5'- aCCuGcgCaugGCCUGgcccgCCGGgGCCGUGAu -3'
miRNA:   3'- -GGuCuaGa--CGGACa----GGCUgUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 207979 0.72 0.785886
Target:  5'- aCCGGAgggauaccgCgGCCUGcCCGGgGCCGUGGc -3'
miRNA:   3'- -GGUCUa--------GaCGGACaGGCUgUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 225337 0.66 0.976786
Target:  5'- cCCGGAUC-GUUagUGUCCGcCGCCG-GAg -3'
miRNA:   3'- -GGUCUAGaCGG--ACAGGCuGUGGCaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.