Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16152 | 3' | -54.8 | NC_004065.1 | + | 225337 | 0.66 | 0.976786 |
Target: 5'- cCCGGAUC-GUUagUGUCCGcCGCCG-GAg -3' miRNA: 3'- -GGUCUAGaCGG--ACAGGCuGUGGCaCU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 207979 | 0.72 | 0.785886 |
Target: 5'- aCCGGAgggauaccgCgGCCUGcCCGGgGCCGUGGc -3' miRNA: 3'- -GGUCUa--------GaCGGACaGGCUgUGGCACU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 204119 | 0.68 | 0.943368 |
Target: 5'- aCCuGcgCaugGCCUGgcccgCCGGgGCCGUGAu -3' miRNA: 3'- -GGuCuaGa--CGGACa----GGCUgUGGCACU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 202523 | 0.66 | 0.977717 |
Target: 5'- aCAGAUCagaggcgcgcucaaaUGCUggGaUCCGGgACCGUGAc -3' miRNA: 3'- gGUCUAG---------------ACGGa-C-AGGCUgUGGCACU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 199651 | 0.68 | 0.951722 |
Target: 5'- gCCAGGUCacGuCCaUGUCCGGguCCGUGu -3' miRNA: 3'- -GGUCUAGa-C-GG-ACAGGCUguGGCACu -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 198650 | 0.73 | 0.758556 |
Target: 5'- aCCAGGUgCagcgUGUC-GUCCGACGCCGUGu -3' miRNA: 3'- -GGUCUA-G----ACGGaCAGGCUGUGGCACu -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 190063 | 0.66 | 0.976786 |
Target: 5'- aCAGAgaguUCUGuUCUGUCCGACaaugaGCCGcGGc -3' miRNA: 3'- gGUCU----AGAC-GGACAGGCUG-----UGGCaCU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 184956 | 0.73 | 0.758556 |
Target: 5'- uCCAGAgCUGCgUGUCCuGACACUGa-- -3' miRNA: 3'- -GGUCUaGACGgACAGG-CUGUGGCacu -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 174243 | 0.67 | 0.959208 |
Target: 5'- gCCGcGAUC-GCCUGcUCGGCGCCGaGAc -3' miRNA: 3'- -GGU-CUAGaCGGACaGGCUGUGGCaCU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 157776 | 0.7 | 0.881431 |
Target: 5'- gCAGAUCUGCUucaccagGUCCGACAUCc--- -3' miRNA: 3'- gGUCUAGACGGa------CAGGCUGUGGcacu -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 157546 | 0.68 | 0.951722 |
Target: 5'- cCCGGucuUCaGCCgcgCCGACACCGUc- -3' miRNA: 3'- -GGUCu--AGaCGGacaGGCUGUGGCAcu -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 156157 | 0.67 | 0.96858 |
Target: 5'- aCCGGcgCUGCCgGUCCGAucaacacuauuauCACUGa-- -3' miRNA: 3'- -GGUCuaGACGGaCAGGCU-------------GUGGCacu -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 154666 | 0.66 | 0.974334 |
Target: 5'- uCCAGcugCU-CCUcUCgGGCACCGUGAg -3' miRNA: 3'- -GGUCua-GAcGGAcAGgCUGUGGCACU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 151253 | 0.68 | 0.943368 |
Target: 5'- uCCAGGUCcugGCCgcuaaccUCGACugCGUGAu -3' miRNA: 3'- -GGUCUAGa--CGGaca----GGCUGugGCACU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 150426 | 0.66 | 0.976549 |
Target: 5'- gCGGGUCcgGCCUGUCCaacagguGACACuCGg-- -3' miRNA: 3'- gGUCUAGa-CGGACAGG-------CUGUG-GCacu -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 148872 | 1.11 | 0.004709 |
Target: 5'- aCCAGAUCUGCCUGUCCGACACCGUGAu -3' miRNA: 3'- -GGUCUAGACGGACAGGCUGUGGCACU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 148632 | 0.69 | 0.912931 |
Target: 5'- cCCGGGUgggcaaguaCUGCCUG-CagGACGCCGUGc -3' miRNA: 3'- -GGUCUA---------GACGGACaGg-CUGUGGCACu -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 148383 | 0.69 | 0.912931 |
Target: 5'- aCCAGAgacaugCUGCUgaUGUCCugGACGCCGa-- -3' miRNA: 3'- -GGUCUa-----GACGG--ACAGG--CUGUGGCacu -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 147127 | 0.69 | 0.923979 |
Target: 5'- uCCAGuaccUCUGCCccGUCUGccgcauCACCGUGGc -3' miRNA: 3'- -GGUCu---AGACGGa-CAGGCu-----GUGGCACU- -5' |
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16152 | 3' | -54.8 | NC_004065.1 | + | 146533 | 0.72 | 0.812041 |
Target: 5'- aUCAGGUCcuuggucgGCCUGcCCGACAUCGUc- -3' miRNA: 3'- -GGUCUAGa-------CGGACaGGCUGUGGCAcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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