miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16152 3' -54.8 NC_004065.1 + 77481 0.68 0.934124
Target:  5'- uCCAGuacaagCUGCCgaagaagCCGGCGCCGgcgGAg -3'
miRNA:   3'- -GGUCua----GACGGaca----GGCUGUGGCa--CU- -5'
16152 3' -54.8 NC_004065.1 + 157546 0.68 0.951722
Target:  5'- cCCGGucuUCaGCCgcgCCGACACCGUc- -3'
miRNA:   3'- -GGUCu--AGaCGGacaGGCUGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 103309 0.67 0.955572
Target:  5'- aUCAGcgCcGCCUGUCUGACccACC-UGAa -3'
miRNA:   3'- -GGUCuaGaCGGACAGGCUG--UGGcACU- -5'
16152 3' -54.8 NC_004065.1 + 174243 0.67 0.959208
Target:  5'- gCCGcGAUC-GCCUGcUCGGCGCCGaGAc -3'
miRNA:   3'- -GGU-CUAGaCGGACaGGCUGUGGCaCU- -5'
16152 3' -54.8 NC_004065.1 + 44773 0.67 0.965854
Target:  5'- gCCAgGGUCguccgagGCCUGggCCGcACACCGUc- -3'
miRNA:   3'- -GGU-CUAGa------CGGACa-GGC-UGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 156157 0.67 0.96858
Target:  5'- aCCGGcgCUGCCgGUCCGAucaacacuauuauCACUGa-- -3'
miRNA:   3'- -GGUCuaGACGGaCAGGCU-------------GUGGCacu -5'
16152 3' -54.8 NC_004065.1 + 81251 0.66 0.971698
Target:  5'- -gGGAuUCUGCCUGUUCuucauccugGACGCCGagGAc -3'
miRNA:   3'- ggUCU-AGACGGACAGG---------CUGUGGCa-CU- -5'
16152 3' -54.8 NC_004065.1 + 154666 0.66 0.974334
Target:  5'- uCCAGcugCU-CCUcUCgGGCACCGUGAg -3'
miRNA:   3'- -GGUCua-GAcGGAcAGgCUGUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 53795 0.68 0.951722
Target:  5'- gCAGGUCUGCgCgGUCCGccgagaGCCGgUGAa -3'
miRNA:   3'- gGUCUAGACG-GaCAGGCug----UGGC-ACU- -5'
16152 3' -54.8 NC_004065.1 + 80967 0.68 0.943368
Target:  5'- cCCcGAUCgGCCUG-CCGcCGCCGUc- -3'
miRNA:   3'- -GGuCUAGaCGGACaGGCuGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 204119 0.68 0.943368
Target:  5'- aCCuGcgCaugGCCUGgcccgCCGGgGCCGUGAu -3'
miRNA:   3'- -GGuCuaGa--CGGACa----GGCUgUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 148632 0.69 0.912931
Target:  5'- cCCGGGUgggcaaguaCUGCCUG-CagGACGCCGUGc -3'
miRNA:   3'- -GGUCUA---------GACGGACaGg-CUGUGGCACu -5'
16152 3' -54.8 NC_004065.1 + 29890 0.7 0.894042
Target:  5'- cCCAGGgccagCUGCuCUGUcaccaggagcggaCCGACGCCGUc- -3'
miRNA:   3'- -GGUCUa----GACG-GACA-------------GGCUGUGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 157776 0.7 0.881431
Target:  5'- gCAGAUCUGCUucaccagGUCCGACAUCc--- -3'
miRNA:   3'- gGUCUAGACGGa------CAGGCUGUGGcacu -5'
16152 3' -54.8 NC_004065.1 + 207979 0.72 0.785886
Target:  5'- aCCGGAgggauaccgCgGCCUGcCCGGgGCCGUGGc -3'
miRNA:   3'- -GGUCUa--------GaCGGACaGGCUgUGGCACU- -5'
16152 3' -54.8 NC_004065.1 + 130805 0.74 0.691483
Target:  5'- gCGGAUC-GCCUGgCCGGCGCUGuUGAg -3'
miRNA:   3'- gGUCUAGaCGGACaGGCUGUGGC-ACU- -5'
16152 3' -54.8 NC_004065.1 + 88820 0.77 0.533667
Target:  5'- gCGGAUCUGCCUGUCguCGGCGCgGUc- -3'
miRNA:   3'- gGUCUAGACGGACAG--GCUGUGgCAcu -5'
16152 3' -54.8 NC_004065.1 + 27398 0.79 0.441255
Target:  5'- cUCAGGUCgagGCCUGUCCGGCguauGCCGUc- -3'
miRNA:   3'- -GGUCUAGa--CGGACAGGCUG----UGGCAcu -5'
16152 3' -54.8 NC_004065.1 + 32639 0.66 0.976786
Target:  5'- aCCGGGaCUGCCUGUCa-ACAUCGc-- -3'
miRNA:   3'- -GGUCUaGACGGACAGgcUGUGGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.