miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16152 5' -56.8 NC_004065.1 + 165148 0.66 0.954122
Target:  5'- uUCUCCGacgcGCGCCG-CGGUCcgcaGGAUGgcGa -3'
miRNA:   3'- -AGAGGC----CGCGGUaGUCAG----CCUGCauC- -5'
16152 5' -56.8 NC_004065.1 + 198399 0.66 0.954122
Target:  5'- --cCCGGCGUCGUCAGcCGcACGa-- -3'
miRNA:   3'- agaGGCCGCGGUAGUCaGCcUGCauc -5'
16152 5' -56.8 NC_004065.1 + 191969 0.66 0.946134
Target:  5'- -gUCCGGCgGCaCGUUGGaCGGGuCGUGGg -3'
miRNA:   3'- agAGGCCG-CG-GUAGUCaGCCU-GCAUC- -5'
16152 5' -56.8 NC_004065.1 + 176427 0.66 0.946134
Target:  5'- --cCCGGUGCCAUUcuggGGAUGUAGa -3'
miRNA:   3'- agaGGCCGCGGUAGucagCCUGCAUC- -5'
16152 5' -56.8 NC_004065.1 + 120443 0.66 0.946134
Target:  5'- -gUCCGG-GCCcUCuugcuGUCGGGCGgcGg -3'
miRNA:   3'- agAGGCCgCGGuAGu----CAGCCUGCauC- -5'
16152 5' -56.8 NC_004065.1 + 109961 0.66 0.946134
Target:  5'- cUCUCCGGCGCgGUCuc-CGacGACGUc- -3'
miRNA:   3'- -AGAGGCCGCGgUAGucaGC--CUGCAuc -5'
16152 5' -56.8 NC_004065.1 + 83530 0.66 0.946134
Target:  5'- aCUuuGGCGC--UCAGggugCGGAUGUGc -3'
miRNA:   3'- aGAggCCGCGguAGUCa---GCCUGCAUc -5'
16152 5' -56.8 NC_004065.1 + 146606 0.66 0.945712
Target:  5'- --aUCGGgGCCGUCGGcggggccgugucuUCGGugGUGa -3'
miRNA:   3'- agaGGCCgCGGUAGUC-------------AGCCugCAUc -5'
16152 5' -56.8 NC_004065.1 + 94260 0.66 0.941817
Target:  5'- cCUCCGGUGCCGUUcacgAGcCaGGCGUc- -3'
miRNA:   3'- aGAGGCCGCGGUAG----UCaGcCUGCAuc -5'
16152 5' -56.8 NC_004065.1 + 194434 0.66 0.941817
Target:  5'- uUCUCCccgGGCGCC-UCGGUCGaaGCGg-- -3'
miRNA:   3'- -AGAGG---CCGCGGuAGUCAGCc-UGCauc -5'
16152 5' -56.8 NC_004065.1 + 26951 0.67 0.927551
Target:  5'- gCUCCGGCGgCcgCGG-CGGGCu--- -3'
miRNA:   3'- aGAGGCCGCgGuaGUCaGCCUGcauc -5'
16152 5' -56.8 NC_004065.1 + 169489 0.67 0.922354
Target:  5'- gUCUCCGGCGgCuUC-GUCGGcUGUAc -3'
miRNA:   3'- -AGAGGCCGCgGuAGuCAGCCuGCAUc -5'
16152 5' -56.8 NC_004065.1 + 17522 0.67 0.922354
Target:  5'- gUCUUCGGcCGUCAUCGcagCGGGCGa-- -3'
miRNA:   3'- -AGAGGCC-GCGGUAGUca-GCCUGCauc -5'
16152 5' -56.8 NC_004065.1 + 148067 0.67 0.916936
Target:  5'- --gUCGGCGCCGggAGUagUGGugGUGGu -3'
miRNA:   3'- agaGGCCGCGGUagUCA--GCCugCAUC- -5'
16152 5' -56.8 NC_004065.1 + 620 0.67 0.916936
Target:  5'- gCUCaGGC-UCGUCAGgcggCGGAUGUGGg -3'
miRNA:   3'- aGAGgCCGcGGUAGUCa---GCCUGCAUC- -5'
16152 5' -56.8 NC_004065.1 + 68330 0.67 0.916936
Target:  5'- gUCUCCGuacucCGCUAUUAuacuuugcggcGUCGGACGUGa -3'
miRNA:   3'- -AGAGGCc----GCGGUAGU-----------CAGCCUGCAUc -5'
16152 5' -56.8 NC_004065.1 + 29621 0.67 0.905443
Target:  5'- ---aUGGCGUCGUCGacGUCGGgcGCGUAGa -3'
miRNA:   3'- agagGCCGCGGUAGU--CAGCC--UGCAUC- -5'
16152 5' -56.8 NC_004065.1 + 114031 0.67 0.905443
Target:  5'- ---gCGGCGCaCGUCGG-CGGACGa-- -3'
miRNA:   3'- agagGCCGCG-GUAGUCaGCCUGCauc -5'
16152 5' -56.8 NC_004065.1 + 194829 0.67 0.89937
Target:  5'- cCUCCGagaugacCGUCGUCGGUCGGAuCGUu- -3'
miRNA:   3'- aGAGGCc------GCGGUAGUCAGCCU-GCAuc -5'
16152 5' -56.8 NC_004065.1 + 120383 0.68 0.872968
Target:  5'- cUCUCCGGCGg-AUCGGgCGGACGc-- -3'
miRNA:   3'- -AGAGGCCGCggUAGUCaGCCUGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.