Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16152 | 5' | -56.8 | NC_004065.1 | + | 26951 | 0.67 | 0.927551 |
Target: 5'- gCUCCGGCGgCcgCGG-CGGGCu--- -3' miRNA: 3'- aGAGGCCGCgGuaGUCaGCCUGcauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 194434 | 0.66 | 0.941817 |
Target: 5'- uUCUCCccgGGCGCC-UCGGUCGaaGCGg-- -3' miRNA: 3'- -AGAGG---CCGCGGuAGUCAGCc-UGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 94260 | 0.66 | 0.941817 |
Target: 5'- cCUCCGGUGCCGUUcacgAGcCaGGCGUc- -3' miRNA: 3'- aGAGGCCGCGGUAG----UCaGcCUGCAuc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 146606 | 0.66 | 0.945712 |
Target: 5'- --aUCGGgGCCGUCGGcggggccgugucuUCGGugGUGa -3' miRNA: 3'- agaGGCCgCGGUAGUC-------------AGCCugCAUc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 191969 | 0.66 | 0.946134 |
Target: 5'- -gUCCGGCgGCaCGUUGGaCGGGuCGUGGg -3' miRNA: 3'- agAGGCCG-CG-GUAGUCaGCCU-GCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 176427 | 0.66 | 0.946134 |
Target: 5'- --cCCGGUGCCAUUcuggGGAUGUAGa -3' miRNA: 3'- agaGGCCGCGGUAGucagCCUGCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 83530 | 0.66 | 0.946134 |
Target: 5'- aCUuuGGCGC--UCAGggugCGGAUGUGc -3' miRNA: 3'- aGAggCCGCGguAGUCa---GCCUGCAUc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 109961 | 0.66 | 0.946134 |
Target: 5'- cUCUCCGGCGCgGUCuc-CGacGACGUc- -3' miRNA: 3'- -AGAGGCCGCGgUAGucaGC--CUGCAuc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 120443 | 0.66 | 0.946134 |
Target: 5'- -gUCCGG-GCCcUCuugcuGUCGGGCGgcGg -3' miRNA: 3'- agAGGCCgCGGuAGu----CAGCCUGCauC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 198399 | 0.66 | 0.954122 |
Target: 5'- --cCCGGCGUCGUCAGcCGcACGa-- -3' miRNA: 3'- agaGGCCGCGGUAGUCaGCcUGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 165148 | 0.66 | 0.954122 |
Target: 5'- uUCUCCGacgcGCGCCG-CGGUCcgcaGGAUGgcGa -3' miRNA: 3'- -AGAGGC----CGCGGUaGUCAG----CCUGCauC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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