Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16152 | 5' | -56.8 | NC_004065.1 | + | 148907 | 1.09 | 0.004385 |
Target: 5'- aUCUCCGGCGCCAUCAGUCGGACGUAGu -3' miRNA: 3'- -AGAGGCCGCGGUAGUCAGCCUGCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 198399 | 0.66 | 0.954122 |
Target: 5'- --cCCGGCGUCGUCAGcCGcACGa-- -3' miRNA: 3'- agaGGCCGCGGUAGUCaGCcUGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 176427 | 0.66 | 0.946134 |
Target: 5'- --cCCGGUGCCAUUcuggGGAUGUAGa -3' miRNA: 3'- agaGGCCGCGGUAGucagCCUGCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 120443 | 0.66 | 0.946134 |
Target: 5'- -gUCCGG-GCCcUCuugcuGUCGGGCGgcGg -3' miRNA: 3'- agAGGCCgCGGuAGu----CAGCCUGCauC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 109961 | 0.66 | 0.946134 |
Target: 5'- cUCUCCGGCGCgGUCuc-CGacGACGUc- -3' miRNA: 3'- -AGAGGCCGCGgUAGucaGC--CUGCAuc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 83530 | 0.66 | 0.946134 |
Target: 5'- aCUuuGGCGC--UCAGggugCGGAUGUGc -3' miRNA: 3'- aGAggCCGCGguAGUCa---GCCUGCAUc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 194434 | 0.66 | 0.941817 |
Target: 5'- uUCUCCccgGGCGCC-UCGGUCGaaGCGg-- -3' miRNA: 3'- -AGAGG---CCGCGGuAGUCAGCc-UGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 26951 | 0.67 | 0.927551 |
Target: 5'- gCUCCGGCGgCcgCGG-CGGGCu--- -3' miRNA: 3'- aGAGGCCGCgGuaGUCaGCCUGcauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 17522 | 0.67 | 0.922354 |
Target: 5'- gUCUUCGGcCGUCAUCGcagCGGGCGa-- -3' miRNA: 3'- -AGAGGCC-GCGGUAGUca-GCCUGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 148067 | 0.67 | 0.916936 |
Target: 5'- --gUCGGCGCCGggAGUagUGGugGUGGu -3' miRNA: 3'- agaGGCCGCGGUagUCA--GCCugCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 29621 | 0.67 | 0.905443 |
Target: 5'- ---aUGGCGUCGUCGacGUCGGgcGCGUAGa -3' miRNA: 3'- agagGCCGCGGUAGU--CAGCC--UGCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 120383 | 0.68 | 0.872968 |
Target: 5'- cUCUCCGGCGg-AUCGGgCGGACGc-- -3' miRNA: 3'- -AGAGGCCGCggUAGUCaGCCUGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 120584 | 0.71 | 0.730041 |
Target: 5'- cCUCCGGCGCCGgucUCGGcCGGgugcACGaGGa -3' miRNA: 3'- aGAGGCCGCGGU---AGUCaGCC----UGCaUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 120543 | 0.71 | 0.730041 |
Target: 5'- gUCUCCGGUguGCCGgcggCGGUCGGcGCGa-- -3' miRNA: 3'- -AGAGGCCG--CGGUa---GUCAGCC-UGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 176578 | 0.7 | 0.802478 |
Target: 5'- cUCUCgGGCacgaccaCCGUCGGUCGGggcgagaacgACGUGGg -3' miRNA: 3'- -AGAGgCCGc------GGUAGUCAGCC----------UGCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 99563 | 0.7 | 0.785066 |
Target: 5'- -gUCCGGCGCCAUCcuccCGcacucGACGUAGa -3' miRNA: 3'- agAGGCCGCGGUAGuca-GC-----CUGCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 181728 | 0.71 | 0.748783 |
Target: 5'- cCUUCGGCGCCAUCu-UCGGAUa--- -3' miRNA: 3'- aGAGGCCGCGGUAGucAGCCUGcauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 130662 | 0.72 | 0.70136 |
Target: 5'- --gUCGGCGCCGUCGcugccaacgcucGUCGGGCGaGGa -3' miRNA: 3'- agaGGCCGCGGUAGU------------CAGCCUGCaUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 115134 | 0.73 | 0.64669 |
Target: 5'- cUCUCCGGguagggagaggucacCGCCAUCGucGUCGGGCGc-- -3' miRNA: 3'- -AGAGGCC---------------GCGGUAGU--CAGCCUGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 165148 | 0.66 | 0.954122 |
Target: 5'- uUCUCCGacgcGCGCCG-CGGUCcgcaGGAUGgcGa -3' miRNA: 3'- -AGAGGC----CGCGGUaGUCAG----CCUGCauC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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