Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16152 | 5' | -56.8 | NC_004065.1 | + | 180274 | 0.68 | 0.872968 |
Target: 5'- cCUgCUGcGCGCCGUCAguGUCGGACa--- -3' miRNA: 3'- aGA-GGC-CGCGGUAGU--CAGCCUGcauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 176578 | 0.7 | 0.802478 |
Target: 5'- cUCUCgGGCacgaccaCCGUCGGUCGGggcgagaacgACGUGGg -3' miRNA: 3'- -AGAGgCCGc------GGUAGUCAGCC----------UGCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 99563 | 0.7 | 0.785066 |
Target: 5'- -gUCCGGCGCCAUCcuccCGcacucGACGUAGa -3' miRNA: 3'- agAGGCCGCGGUAGuca-GC-----CUGCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 181728 | 0.71 | 0.748783 |
Target: 5'- cCUUCGGCGCCAUCu-UCGGAUa--- -3' miRNA: 3'- aGAGGCCGCGGUAGucAGCCUGcauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 130662 | 0.72 | 0.70136 |
Target: 5'- --gUCGGCGCCGUCGcugccaacgcucGUCGGGCGaGGa -3' miRNA: 3'- agaGGCCGCGGUAGU------------CAGCCUGCaUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 115134 | 0.73 | 0.64669 |
Target: 5'- cUCUCCGGguagggagaggucacCGCCAUCGucGUCGGGCGc-- -3' miRNA: 3'- -AGAGGCC---------------GCGGUAGU--CAGCCUGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 39942 | 0.73 | 0.613249 |
Target: 5'- cCUCCGGUGCCGcggcUCAuuGUCGGACa--- -3' miRNA: 3'- aGAGGCCGCGGU----AGU--CAGCCUGcauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 146606 | 0.66 | 0.945712 |
Target: 5'- --aUCGGgGCCGUCGGcggggccgugucuUCGGugGUGa -3' miRNA: 3'- agaGGCCgCGGUAGUC-------------AGCCugCAUc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 94260 | 0.66 | 0.941817 |
Target: 5'- cCUCCGGUGCCGUUcacgAGcCaGGCGUc- -3' miRNA: 3'- aGAGGCCGCGGUAG----UCaGcCUGCAuc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 68330 | 0.67 | 0.916936 |
Target: 5'- gUCUCCGuacucCGCUAUUAuacuuugcggcGUCGGACGUGa -3' miRNA: 3'- -AGAGGCc----GCGGUAGU-----------CAGCCUGCAUc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 194829 | 0.67 | 0.89937 |
Target: 5'- cCUCCGagaugacCGUCGUCGGUCGGAuCGUu- -3' miRNA: 3'- aGAGGCc------GCGGUAGUCAGCCU-GCAuc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 191969 | 0.66 | 0.946134 |
Target: 5'- -gUCCGGCgGCaCGUUGGaCGGGuCGUGGg -3' miRNA: 3'- agAGGCCG-CG-GUAGUCaGCCU-GCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 114031 | 0.67 | 0.905443 |
Target: 5'- ---gCGGCGCaCGUCGG-CGGACGa-- -3' miRNA: 3'- agagGCCGCG-GUAGUCaGCCUGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 169489 | 0.67 | 0.922354 |
Target: 5'- gUCUCCGGCGgCuUC-GUCGGcUGUAc -3' miRNA: 3'- -AGAGGCCGCgGuAGuCAGCCuGCAUc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 165148 | 0.66 | 0.954122 |
Target: 5'- uUCUCCGacgcGCGCCG-CGGUCcgcaGGAUGgcGa -3' miRNA: 3'- -AGAGGC----CGCGGUaGUCAG----CCUGCauC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 620 | 0.67 | 0.916936 |
Target: 5'- gCUCaGGC-UCGUCAGgcggCGGAUGUGGg -3' miRNA: 3'- aGAGgCCGcGGUAGUCa---GCCUGCAUC- -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 2040 | 0.69 | 0.81932 |
Target: 5'- cUCUCCGGCugGCUcUCGGUCcucGACGUGa -3' miRNA: 3'- -AGAGGCCG--CGGuAGUCAGc--CUGCAUc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 17522 | 0.67 | 0.922354 |
Target: 5'- gUCUUCGGcCGUCAUCGcagCGGGCGa-- -3' miRNA: 3'- -AGAGGCC-GCGGUAGUca-GCCUGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 198399 | 0.66 | 0.954122 |
Target: 5'- --cCCGGCGUCGUCAGcCGcACGa-- -3' miRNA: 3'- agaGGCCGCGGUAGUCaGCcUGCauc -5' |
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16152 | 5' | -56.8 | NC_004065.1 | + | 176427 | 0.66 | 0.946134 |
Target: 5'- --cCCGGUGCCAUUcuggGGAUGUAGa -3' miRNA: 3'- agaGGCCGCGGUAGucagCCUGCAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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