miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16153 3' -53.7 NC_004065.1 + 179572 0.66 0.989038
Target:  5'- cGUGCUGGGCgcugaAggggcgccacgcgugUGCGAcCGCGCcucgAGCg -3'
miRNA:   3'- cCACGACCUG-----Ua--------------ACGCUaGCGCG----UCG- -5'
16153 3' -53.7 NC_004065.1 + 77094 0.66 0.988901
Target:  5'- --cGCUGGAgAU--CGAcUCGCGCuGCa -3'
miRNA:   3'- ccaCGACCUgUAacGCU-AGCGCGuCG- -5'
16153 3' -53.7 NC_004065.1 + 164744 0.66 0.988901
Target:  5'- -aUGCuucUGGACGccGCGGcCGUGCGGUa -3'
miRNA:   3'- ccACG---ACCUGUaaCGCUaGCGCGUCG- -5'
16153 3' -53.7 NC_004065.1 + 96561 0.66 0.988763
Target:  5'- --cGCUGGACucgUccgccgacgagccGCGA-CGCGUGGCg -3'
miRNA:   3'- ccaCGACCUGua-A-------------CGCUaGCGCGUCG- -5'
16153 3' -53.7 NC_004065.1 + 64260 0.66 0.987461
Target:  5'- gGGUGcCUGGACGcguggugccGCGAgggUGUGCuGCu -3'
miRNA:   3'- -CCAC-GACCUGUaa-------CGCUa--GCGCGuCG- -5'
16153 3' -53.7 NC_004065.1 + 194863 0.66 0.985881
Target:  5'- cGGUGCcaGGAguCAcgGCGAucugaUCGCGguGUa -3'
miRNA:   3'- -CCACGa-CCU--GUaaCGCU-----AGCGCguCG- -5'
16153 3' -53.7 NC_004065.1 + 85144 0.66 0.985881
Target:  5'- uGUGCUGGG---UGCaGAUCuacuucCGCAGCg -3'
miRNA:   3'- cCACGACCUguaACG-CUAGc-----GCGUCG- -5'
16153 3' -53.7 NC_004065.1 + 126130 0.66 0.985881
Target:  5'- -cUGCUGGA---UGCGGUCgGCGUgcuGCg -3'
miRNA:   3'- ccACGACCUguaACGCUAG-CGCGu--CG- -5'
16153 3' -53.7 NC_004065.1 + 36167 0.66 0.985881
Target:  5'- cGGcGCUGuGuCAgccgcucGCGGgggggCGCGCAGCa -3'
miRNA:   3'- -CCaCGAC-CuGUaa-----CGCUa----GCGCGUCG- -5'
16153 3' -53.7 NC_004065.1 + 87516 0.66 0.985881
Target:  5'- --cGCU-GACAcggUGuCGA-CGCGCAGCg -3'
miRNA:   3'- ccaCGAcCUGUa--AC-GCUaGCGCGUCG- -5'
16153 3' -53.7 NC_004065.1 + 141668 0.66 0.985715
Target:  5'- -uUGCUGGGCAgcgacgacaUGCGGgagccuaUgGCGCGGUu -3'
miRNA:   3'- ccACGACCUGUa--------ACGCU-------AgCGCGUCG- -5'
16153 3' -53.7 NC_004065.1 + 6421 0.66 0.985379
Target:  5'- aGGUGgUGGAUAgauacagguuuagucGgGAgCGUGCAGCg -3'
miRNA:   3'- -CCACgACCUGUaa-------------CgCUaGCGCGUCG- -5'
16153 3' -53.7 NC_004065.1 + 3883 0.66 0.984153
Target:  5'- --aGCUGGGCugUGCGAU-GC-CAGCc -3'
miRNA:   3'- ccaCGACCUGuaACGCUAgCGcGUCG- -5'
16153 3' -53.7 NC_004065.1 + 85498 0.66 0.984153
Target:  5'- uGGUGCUGGcCAUgucGCuggCGCuCGGCu -3'
miRNA:   3'- -CCACGACCuGUAa--CGcuaGCGcGUCG- -5'
16153 3' -53.7 NC_004065.1 + 149905 0.66 0.984153
Target:  5'- gGGUGCcgguUGGAUga-GgGG-CGCGCGGCu -3'
miRNA:   3'- -CCACG----ACCUGuaaCgCUaGCGCGUCG- -5'
16153 3' -53.7 NC_004065.1 + 72581 0.66 0.984153
Target:  5'- cGGUGCUGGACuacauccUGgGGUCGUacguGUucGCg -3'
miRNA:   3'- -CCACGACCUGua-----ACgCUAGCG----CGu-CG- -5'
16153 3' -53.7 NC_004065.1 + 136612 0.66 0.983042
Target:  5'- gGGUGCgGGGCGcugguccgaggcgGCGGUCcggaGCGGCg -3'
miRNA:   3'- -CCACGaCCUGUaa-----------CGCUAGcg--CGUCG- -5'
16153 3' -53.7 NC_004065.1 + 35609 0.66 0.982269
Target:  5'- cGGUGCgGGAUccacgGCGG-CG-GCGGCg -3'
miRNA:   3'- -CCACGaCCUGuaa--CGCUaGCgCGUCG- -5'
16153 3' -53.7 NC_004065.1 + 115637 0.66 0.982269
Target:  5'- gGGguagGCUGGACGgcaUGgGucUCGCGCcGUa -3'
miRNA:   3'- -CCa---CGACCUGUa--ACgCu-AGCGCGuCG- -5'
16153 3' -53.7 NC_004065.1 + 121428 0.66 0.982269
Target:  5'- aGGUaCUGGAg---GCGAUgCGUGCGGUu -3'
miRNA:   3'- -CCAcGACCUguaaCGCUA-GCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.